ArticleCurrent genomics2013
Computational Prediction of Protein-Protein Interaction Networks: Algo-rithms and Resources.
Article in Current genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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Who cites it
35 citing papers in PubMed, 141 citations in OpenAlex.
- New insights into protein-protein interaction modulators in drug discovery and therapeutic advance.Signal transduction and targeted therapy · 2024Review
- Statistical analysis of sequential motifs at biologically relevant protein-protein interfaces.Computational and structural biotechnology journal · 2024Article
- Identification of hub genes and potential networks by centrality network analysis of PCR amplified Fusarium oxysporum f. sp. lycopersici EF1α gene.BMC microbiology · 2024Article
- Assessment of community efforts to advance network-based prediction of protein-protein interactions.Nature communications · 2023Article
- Root and shoot biology of Arabidopsis halleri dissected by WGCNA: an insight into the organ pivotal pathways and genes of an hyperaccumulator.Functional & integrative genomics · 2022Article
- Efficient link prediction in the protein-protein interaction network using topological information in a generative adversarial network machine learning model.BMC bioinformatics · 2022Article
- YAPPIS-Finder: A novel method for protein-protein interaction site predictions.Bioinformation · 2022Article
- Functional Annotation of Hypothetical Proteins From theBioinformatics and biology insights · 2022Article
- PSSMCOOL: a comprehensive R package for generating evolutionary-based descriptors of protein sequences from PSSM profiles.Biology methods & protocols · 2022Article
- Functional networks of the human bromodomain-containing proteins.Frontiers in bioinformatics · 2022Article
- Overview of methods for characterization and visualization of a protein-protein interaction network in a multi-omics integration context.Frontiers in molecular biosciences · 2022Review
- Protein-protein interactions: Methods, databases, and applications in virus-host study.World journal of virology · 2021Review
- IHP-PING-generating integrated human protein-protein interaction networks on-the-fly.Briefings in bioinformatics · 2021Article
- Posttranslational modifications in proteins: resources, tools and prediction methods.Database : the journal of biological databases and curation · 2021Article
- Databases for Protein-Protein Interactions.Methods in molecular biology (Clifton, N.J.) · 2021Review
- Improved cytokine-receptor interaction prediction by exploiting the negative sample space.BMC bioinformatics · 2020Article
- Chemometric Models of Differential Amino Acids at the NaMolecules (Basel, Switzerland) · 2020Article
- Comparative analysis of differential proteome-wide protein-protein interaction network ofBiochemistry and biophysics reports · 2019Article
- Journal Current Genomics: News and Editorial Prospects.Current genomics · 2019Article
- The Helitron family classification using SVM based on Fourier transform features applied on an unbalanced dataset.Medical & biological engineering & computing · 2019Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Protein interactions play an important role in the discovery of protein functions and pathways in biological processes. This is especially true in case of the diseases caused by the loss of specific protein-protein interactions in the organism. The accuracy of experimental results in finding protein-protein interactions, however, is rather dubious and high throughput experimental results have shown both high false positive beside false negative information for protein interaction. Computational methods have attracted tremendous attention among biologists because of the ability to predict protein-protein interactions and validate the obtained experimental results. In this study, we have reviewed several computational methods for protein-protein interaction prediction as well as describing major databases, which store both predicted and detected protein-protein interactions, and the tools used for analyzing protein interaction networks and improving protein-protein interaction reliability.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.