Evidence map›Paper›PMID 24394563›Full record

ArticlePlant signaling & behavior2013

Impact of Ca(2+) on structure of soybean CDPKβ and accessibility of the Tyr-24 autophosphorylation site.

Man-Ho Oh, Xia Wu, Steven C Huber

Open access · hybridAbstract read
In one paragraph

Article in Plant signaling & behavior, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Man-Ho OhDepartment of Plant Biology; University of Illinois; Urbana, IL USA; Department of Biological Science; College of Biological Sciences and Biotechnology; Chungnam National University; Daejeon, South Korea.
Xia WuDepartment of Genome Sciences; University of Washington; Seattle, WA USA.
Steven C HuberDepartment of Plant Biology; University of Illinois; Urbana, IL USA; US Department of Agriculture; Agricultural Research Service; Urbana, IL USA.
Chungnam National University · KRSeattle University · USUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several plant CDPKs were recently shown to be dual specificity kinases rather than Ser/Thr kinases as traditionally classified by sequence analysis. In the present study we confirm the autophosphorylation of recombinant soybean His 6-GmCDPKβ at the Tyr-24 site using sequence- and modification- specific antibodies. Homology modeling of soybean CDPKβ based on recent structures determined for several apicomplexan CDPKs suggested that phosphotyrosine-24 may be inaccessible to phosphatases. However, we report that dephosphorylation of CDPKβ by the protein tyrosine phosphatase 1B, PTP1B, was not restricted in the presence of calcium. Thus, despite conformational changes likely associated with calcium binding to the CDPKs, phosphotyrosine sites remain fully accessible to dephosphorylation suggesting the possibility of conformational breathing and flexing.

Indexed as

Amino Acid SequenceCalciumCrystallography, X-RayGlycine maxModels, MolecularMolecular Sequence DataPhosphorylationPhosphotyrosineProtein KinasesProtein Structure, TertiaryProtein Tyrosine Phosphatase, Non-Receptor Type 1Structural Homology, ProteinToxoplasmaCalciumPhosphotyrosineProtein KinasesProtein Tyrosine Phosphatase, Non-Receptor Type 1calcium signalingconformational changehomology modelingmodification-specific antibodiesprotein tyrosine phosphatase 1B (PTP1B)tyrosine autophosphorylation

Identifiers

PMID24394563
PMCPMC4091344
OpenAlexW1983126135

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.