Evidence map›Paper›PMID 24392134›Full record

ArticlePloS one2014

Association study of serotonin transporter SLC6A4 gene with Chinese Han irritable bowel syndrome.

Jing Yuan, ChuanYuan Kang, Min Wang, Qiang Wang, PeiKai Li, Hua Liu, Yu Hou, Ping Su, Fan Yang, YuJun Wei and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
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  13. Review
  14. Genetic variation in GPBAR1 predisposes to quantitative changes in colonic transit and bile acid excretion.American journal of physiology. Gastrointestinal and liver physiology · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Jing YuanClinical Psychology Department, No. 2 People's Hospital of Yunnan Province, Kunming, China.
ChuanYuan KangPsychiatry Department, The First Affiliated Hospital of Kunming Medical University, Kunming, China.
Min WangGastroenterology Department, No. 2 People's Hospital of Yunnan Province, Kunming, China.
Qiang WangGastroenterology Department, No. 2 People's Hospital of Yunnan Province, Kunming, China.
PeiKai LiClinical Psychology Department, No. 2 People's Hospital of Yunnan Province, Kunming, China.
Hua LiuDepartment of Laboratory, The First Affiliated Hospital of Kunming Medical University, Kunming, China.
Yu HouClinical Psychology Department, No. 2 People's Hospital of Yunnan Province, Kunming, China.
Ping SuClinical Psychology Department, No. 2 People's Hospital of Yunnan Province, Kunming, China.
Fan YangClinical Psychology Department, No. 2 People's Hospital of Yunnan Province, Kunming, China.
YuJun WeiClinical Psychology Department, No. 2 People's Hospital of Yunnan Province, Kunming, China.
JianZhong YangClinical Psychology Department, No. 2 People's Hospital of Yunnan Province, Kunming, China.
Second People's Hospital of Yunnan Province · CNKunming Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveIrritable bowel syndrome (IBS) is a common clinical gastrointestinal dysfunction disorders. 5-sertonon (5-hydroxytryptamine, 5-HT) is a very important neurotransmitter, which is involved in gastrointestinal motion and sensation. Solute carrier family 6 member 4 (SLC6A4) gene encode serotonin transporter (SERT) which function is to rapidly reuptake the most of 5-HT. Therefore, it is needed to explore the association between SLC6A4 gene polymorphisms and IBS.

methods119 patients and 238 healthy controls were administrated to detect the SLC6A4 gene polymorphisms including 5-HT-transporter-gene-linked polymorphic region (5-HTTLPR), variable number of tandem repeats (VNTRs) and three selected tag Single Nucleotide Polymorphisms (SNPs) rs1042173, rs3794808, rs2020936 by using polymerase chain reaction (PCR) and TaqMan® SNP Genotyping.

resultsThere were significant difference for 5-HTTLPR between IBS and control groups (X2 = 106.168, P<0.0001). In control group, genotypes were mainly L/L (58.4%), however, the genotypes in IBS were S/S (37.8%). The significant difference was shown in D-IBS subjects when compared to the controls (X(2) = 50.850, P<0.0001) for 5-HTTLPR. For STin2 VNTR, rs1042173, rs3794808, and rs2020936 polymorphisms, there were no any significant differences between IBS and control groups. There were no statistical significantly haplotypes for 5-HTTLPR, VNTRs and the three SNPs between IBS and controls.

conclusionThe S allele in 5-HTTLPR was a susceptible allele with Chinese Han IBS, but other associations of VNTRs, three selected Tag SNPs and positive haplotype with IBS were not found. It is indicated that much research are needed to study the relationship between other polymorphisms in SLC6A4 gene and IBS.

Indexed as

AdultAllelesAsian PeopleCase-Control StudiesChinaFemaleGene FrequencyGenetic Association StudiesGenotypeHaplotypesHumansIrritable Bowel SyndromeLinkage DisequilibriumMaleMiddle AgedPolymorphism, Single NucleotideSerotonin Plasma Membrane Transport ProteinsSLC6A4 protein, human

Identifiers

PMID24392134
PMCPMC3879322
OpenAlexW2053876587

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.