Evidence map›Paper›PMID 24392087›Full record

ArticlePloS one2014

Top3α is required during the convergent migration step of double Holliday junction dissolution.

Stefanie Hartman Chen, Jody L Plank, Smaranda Willcox, Jack D Griffith, Tao-shih Hsieh

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

  1. Mechanistic basis for relaxation of DNA supercoils by human topoisomerase IIIα-RMI1-RMI2.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Review
  4. Generation of double Holliday junction DNAs and their dissolution/resolution within a chromatin context.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Article
  6. Review
  7. Coordinated roles of SLX4 and MutSβ in DNA repair and the maintenance of genome stability.Critical reviews in biochemistry and molecular biology · 2021
    Review
  8. Review
  9. Article
  10. Direct observation of helicase-topoisomerase coupling within reverse gyrase.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  11. The many lives of type IA topoisomerases.The Journal of biological chemistry · 2020
    Review
  12. Review
  13. The dissolution of double Holliday junctions.Cold Spring Harbor perspectives in biology · 2014
    Review
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Stefanie Hartman ChenDepartment of Biochemistry, Duke University Medical Center, Durham, North Carolina, United States of America.
Jody L PlankDepartment of Microbiology, University of California Davis, Davis, California, United States of America.
Smaranda WillcoxLineberger Cancer Center, University of North Carolina, Chapel Hill, North Carolina, United States of America.
Jack D GriffithLineberger Cancer Center, University of North Carolina, Chapel Hill, North Carolina, United States of America.
Tao-shih HsiehDepartment of Biochemistry, Duke University Medical Center, Durham, North Carolina, United States of America ; Institute of Cellular and Organismic Biology, Academia Sinica, Taipei, Taiwan.
Duke Medical Center · USUNC Lineberger Comprehensive Cancer CenterUniversity of California, Davis · USUniversity of North Carolina at Chapel Hill · US

Funding

Vironomics and Biostatistics CoreP01CA019014 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BLOSSOM A DAMANIA, NANCY JOAN RAAB-TRAUB · 1985 to 2026
$43.8M
FUNCTION AND MECHANISM OF DNA TOPOISOMERASER01GM029006 · NIGMS · DUKE UNIVERSITY · PI HSIEH, TAO-SHIH · 1985 to 2010
$5.5M
HOMOLOOUS RECOMBINATION: ITS MOLECULAR CYTOLOGYR01GM031819 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GRIFFITH, JACK D · 1985 to 2017
$5.2M
Nucleoprotein structures formed at sites of DNA damageR01ES013773 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GRIFFITH, JACK D · 2005 to 2015
$3.2M
NCI NIH HHS P01 CA019014NIEHS NIH HHS R01 ES013773NIGMS NIH HHS GM031819NIGMS NIH HHS GM 29006NIGMS NIH HHS R01 GM029006NIGMS NIH HHS R01 GM031819
6 · The paper itself

Abstract

Although Blm and Top3α are known to form a minimal dissolvasome that can uniquely undo a double Holliday junction structure, the details of the mechanism remain unknown. It was originally suggested that Blm acts first to create a hemicatenane structure from branch migration of the junctions, followed by Top3α performing strand passage to decatenate the interlocking single strands. Recent evidence suggests that Top3α may also be important for assisting in the migration of the junctions. Using a mismatch-dHJ substrate (MM-DHJS) and eukaryotic Top1 (in place of Top3α), we show that the presence of a topoisomerase is required for Blm to substantially migrate a topologically constrained Holliday junction. When investigated by electron microscopy, these migrated structures did not resemble a hemicatenane. However, when Blm is together with Top3α, the dissolution reaction is processive with no pausing at a partially migrated structure. Potential mechanisms are discussed.

Indexed as

AnimalsDNA, CruciformDNA HelicasesDNA Topoisomerases, Type IDrosophilaDrosophila ProteinsProtein BindingSubstrate Specificityblm protein, DrosophilaDNA, CruciformDNA HelicasesDNA Topoisomerases, Type IDrosophila Proteins

Identifiers

PMID24392087
PMCPMC3879244
OpenAlexW2046591841

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.