Evidence map›Paper›PMID 24392018›Full record

ArticlePloS one2013

The yeast p5 type ATPase, spf1, regulates manganese transport into the endoplasmic reticulum.

Yifat Cohen, Márton Megyeri, Oscar C W Chen, Giuseppe Condomitti, Isabelle Riezman, Ursula Loizides-Mangold, Alaa Abdul-Sada, Nitzan Rimon, Howard Riezman, Frances M Platt and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The structure and function of P5A-ATPases.Nature communications · 2024
    Article
  5. Article
  6. Review
  7. A genome-wide optical pooled screen reveals regulators of cellular antiviral responses.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. The Endoplasmic Reticulum and the Fidelity of Nascent Protein Localization.Cold Spring Harbor perspectives in biology · 2023
    Review
  9. The Endoplasmic Reticulum ATP13A1 is Essential for MAVS-Mediated Antiviral Innate Immunity.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Cell death induction inCurrent research in microbial sciences · 2022
    Review
  14. Article
  15. Fungal-Metal Interactions: A Review of Toxicity and Homeostasis.Journal of fungi (Basel, Switzerland) · 2021
    Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Yifat CohenDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Márton MegyeriDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel ; Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel.
Oscar C W ChenDepartment of Pharmacology, University of Oxford, Oxford, United Kingdom.
Giuseppe CondomittiDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel.
Isabelle RiezmanDepartment of Biochemistry, University of Geneva, Geneva, Switzerland.
Ursula Loizides-MangoldDepartment of Biochemistry, University of Geneva, Geneva, Switzerland.
Alaa Abdul-SadaSchool of Life Sciences, University of Sussex, Brighton, United Kingdom.
Nitzan RimonDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Howard RiezmanDepartment of Biochemistry, University of Geneva, Geneva, Switzerland ; National Centre of Competence in Research (NCCR) Chemical Biology, University of Geneva, Geneva, Switzerland.
Frances M PlattDepartment of Pharmacology, University of Oxford, Oxford, United Kingdom.
Anthony H FutermanDepartment of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel ; The Joseph Meyerhoff Professor of Biochemistry at the Weizmann Institute of Science, Weizmann Institute of Science, Rehovot, Israel.
Maya SchuldinerDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Weizmann Institute of Science · ILUniversity of Geneva · CHUniversity of Oxford · GBNCCR Chemical Biology - Visualisation and Control of Biological Processes Using Chemistry · CHUniversity of Sussex · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The endoplasmic reticulum (ER) is a large, multifunctional and essential organelle. Despite intense research, the function of more than a third of ER proteins remains unknown even in the well-studied model organism Saccharomyces cerevisiae. One such protein is Spf1, which is a highly conserved, ER localized, putative P-type ATPase. Deletion of SPF1 causes a wide variety of phenotypes including severe ER stress suggesting that this protein is essential for the normal function of the ER. The closest homologue of Spf1 is the vacuolar P-type ATPase Ypk9 that influences Mn(2+) homeostasis. However in vitro reconstitution assays with Spf1 have not yielded insight into its transport specificity. Here we took an in vivo approach to detect the direct and indirect effects of deleting SPF1. We found a specific reduction in the luminal concentration of Mn(2+) in ∆spf1 cells and an increase following it's overexpression. In agreement with the observed loss of luminal Mn(2+) we could observe concurrent reduction in many Mn(2+)-related process in the ER lumen. Conversely, cytosolic Mn(2+)-dependent processes were increased. Together, these data support a role for Spf1p in Mn(2+) transport in the cell. We also demonstrate that the human sequence homologue, ATP13A1, is a functionally conserved orthologue. Since ATP13A1 is highly expressed in developing neuronal tissues and in the brain, this should help in the study of Mn(2+)-dependent neurological disorders.

Indexed as

Adenosine TriphosphatasesATP-Binding Cassette TransportersBiological TransportCell Cycle ProteinsEndoplasmic ReticulumHeLa CellsHomeostasisHumansManganeseMicrosomesMutationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Homology, Amino AcidAdenosine TriphosphatasesATP-Binding Cassette TransportersCell Cycle ProteinsManganeseSaccharomyces cerevisiae ProteinsSPF1 protein, S cerevisiae

Identifiers

PMID24392018
PMCPMC3877380
OpenAlexW2155065217

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.