ArticlePloS one2013
Lactococcus garvieae: where is it from? A first approach to explore the evolutionary history of this emerging pathogen.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
26 citing papers in PubMed.
- Phenotypic and phylogenomic characterization of Lactococcus garvieae isolates from rainbow trout (Oncorhynchus mykiss) in Türkiye.Veterinary research communications · 2026Article
- Multilocus Sequence Typing Reveals New Insights into the Population Structure and Genetic Diversity ofMicroorganisms · 2026Article
- Complete genomes and plasmid profiles of fiveMicrobiology resource announcements · 2026Article
- Comparative Molecular and Antimicrobial Analysis ofAnimals : an open access journal from MDPI · 2026Article
- CapsulatedFrontiers in cellular and infection microbiology · 2026Article
- The Use of MALDI-TOF MS for Microbial Identification of Discolored Vacuum-Packaged Beef.Journal of food science · 2025Article
- First report of the isolation and molecular characterisation ofJournal of veterinary research · 2025Article
- A Plasmid-Encoded Surface Polysaccharide Partly BlocksInternational journal of molecular sciences · 2025Article
- Antimicrobial Resistance inMicroorganisms · 2024Article
- Complete genome sequence ofMicrobiology resource announcements · 2024Article
- Genomic investigation ofMicrobiology spectrum · 2024Article
- Redefining piscine lactococcosis.Applied and environmental microbiology · 2024Article
- Comparative Genomic Analyses of Lactococcus garvieae Isolated from Bovine Mastitis in China.Microbiology spectrum · 2023Article
- Update on Novel Taxa and Revised Taxonomic Status of Bacteria Isolated from Nondomestic Animals Described in 2018 to 2021.Journal of clinical microbiology · 2023Review
- Comparative genomics and evolutionary analysis ofMicrobial genomics · 2022Article
- Feed Insects as a Reservoir of Granadaene-Producing Lactococci.Frontiers in microbiology · 2022Article
- Detection of virulence-related genes in Lactococcus garvieae and their expression in response to different conditions.Folia microbiologica · 2018Article
- Lactococcus petauri sp. nov., isolated from an abscess of a sugar glider.International journal of systematic and evolutionary microbiology · 2017Article
- Characterization of prophages of Lactococcus garvieae.Scientific reports · 2017Article
- The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens.Frontiers in microbiology · 2017Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The population structure and diversity of Lactococcus garvieae, an emerging pathogen of increasing clinical significance, was determined at both gene and genome level. Selected lactococcal isolates of various origins were analyzed by a multi locus sequence typing (MLST). This gene-based analysis was compared to genomic characteristics, estimated through the complete genome sequences available in database. The MLST identified two branches containing the majority of the strains and two branches bearing one strain each. One strain was particularly differentiated from the other L. garvieae strains, showing a significant genetic distance. The genomic characteristics, correlated to the MLST-based phylogeny, indicated that this "separated strain" appeared first and could be considered the evolutionary intermediate between Lactococcus lactis and L. garvieae main clusters. A preliminary genome analysis of L. garvieae indicated a pan-genome constituted of about 4100 genes, which included 1341 core genes and 2760 genes belonging to the dispensable genome. A total of 1491 Clusters of Orthologous Genes (COGs) were found to be specific to the 11 L. garvieae genomes, with the genome of the "separated strain" showing the highest presence of unique genes.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.