Evidence map›Paper›PMID 24391933›Full record

ArticlePloS one2013

Reconstructed ancestral Myo-inositol-3-phosphate synthases indicate that ancestors of the Thermococcales and Thermotoga species were more thermophilic than their descendants.

Nicholas C Butzin, Pascal Lapierre, Anna G Green, Kristen S Swithers, J Peter Gogarten, Kenneth M Noll

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 42 citations in OpenAlex.

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  11. Physiological, metabolic and biotechnological features of extremely thermophilic microorganisms.Wiley interdisciplinary reviews. Systems biology and medicine · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Nicholas C ButzinDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.
Pascal LapierreDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.
Anna G GreenDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.
Kristen S SwithersDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.
J Peter GogartenDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.
Kenneth M NollDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.
University of Connecticut · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The bacterial genomes of Thermotoga species show evidence of significant interdomain horizontal gene transfer from the Archaea. Members of this genus acquired many genes from the Thermococcales, which grow at higher temperatures than Thermotoga species. In order to study the functional history of an interdomain horizontally acquired gene we used ancestral sequence reconstruction to examine the thermal characteristics of reconstructed ancestral proteins of the Thermotoga lineage and its archaeal donors. Several ancestral sequence reconstruction methods were used to determine the possible sequences of the ancestral Thermotoga and Archaea myo-inositol-3-phosphate synthase (MIPS). These sequences were predicted to be more thermostable than the extant proteins using an established sequence composition method. We verified these computational predictions by measuring the activities and thermostabilities of purified proteins from the Thermotoga and the Thermococcales species, and eight ancestral reconstructed proteins. We found that the ancestral proteins from both the archaeal donor and the Thermotoga most recent common ancestor recipient were more thermostable than their descendants. We show that there is a correlation between the thermostability of MIPS protein and the optimal growth temperature (OGT) of its host, which suggests that the OGT of the ancestors of these species of Archaea and the Thermotoga grew at higher OGTs than their descendants.

Indexed as

Evolution, MolecularHot TemperatureAdaptation, BiologicalArchaeaComputational BiologyGene Transfer, HorizontalIntramolecular LyasesLikelihood FunctionsModels, GeneticPhylogenySpecies SpecificityThermococcalesThermotoga maritimaD-myo-inositol-3-phosphate synthaseIntramolecular Lyases

Identifiers

PMID24391933
PMCPMC3877268
OpenAlexW2019984426

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.