Evidence map›Paper›PMID 24391764›Full record

ArticlePloS one2013

Substantial conformational change mediated by charge-triad residues of the death effector domain in protein-protein interactions.

Edward C Twomey, Dana F Cordasco, Stephen D Kozuch, Yufeng Wei

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Edward C TwomeyInstitute of NeuroImmune Pharmacology, Seton Hall University, South Orange, New Jersey, United States of America ; Department of Chemistry and Biochemistry, Seton Hall University, South Orange, New Jersey, United States of America ; Integrated Program in Cellular, Molecular, and Biomedical Studies, Columbia University, New York, New York, United States of America.
Dana F CordascoInstitute of NeuroImmune Pharmacology, Seton Hall University, South Orange, New Jersey, United States of America ; Department of Chemistry and Biochemistry, Seton Hall University, South Orange, New Jersey, United States of America.
Stephen D KozuchDepartment of Chemistry and Biochemistry, Seton Hall University, South Orange, New Jersey, United States of America.
Yufeng WeiInstitute of NeuroImmune Pharmacology, Seton Hall University, South Orange, New Jersey, United States of America.
Seton Hall University · US

Funding

Conformations and Dynamics of PED/PEA-15 in Protein-Protein InteractionsR15CA179410 · NCI · SETON HALL UNIVERSITY · PI WEI, YUFENG · 2013 to 2013
$330k
NCI NIH HHS 15CA179410NCI NIH HHS R15 CA179410
6 · The paper itself

Abstract

Protein conformational changes are commonly associated with the formation of protein complexes. The non-catalytic death effector domains (DEDs) mediate protein-protein interactions in a variety of cellular processes, including apoptosis, proliferation and migration, and glucose metabolism. Here, using NMR residual dipolar coupling (RDC) data, we report a conformational change in the DED of the phosphoprotein enriched in astrocytes, 15 kDa (PEA-15) protein in the complex with a mitogen-activated protein (MAP) kinase, extracellular regulated kinase 2 (ERK2), which is essential in regulating ERK2 cellular distribution and function in cell proliferation and migration. The most significant conformational change in PEA-15 happens at helices α2, α3, and α4, which also possess the highest flexibility among the six-helix bundle of the DED. This crucial conformational change is modulated by the D/E-RxDL charge-triad motif, one of the prominent structural features of DEDs, together with a number of other electrostatic and hydrogen bonding interactions on the protein surface. Charge-triad motif promotes the optimal orientation of key residues and expands the binding interface to accommodate protein-protein interactions. However, the charge-triad residues are not directly involved in the binding interface between PEA-15 and ERK2.

Indexed as

Protein Interaction Domains and MotifsAnimalsApoptosis Regulatory ProteinsDeath Domain Receptor Signaling Adaptor ProteinsHydrogen BondingMiceMitogen-Activated Protein Kinase 1Models, MolecularNuclear Magnetic Resonance, BiomolecularPhosphoproteinsProtein Structure, SecondaryStatic ElectricityApoptosis Regulatory ProteinsDeath Domain Receptor Signaling Adaptor ProteinsDedd protein, mouseMitogen-Activated Protein Kinase 1Pea15 protein, mousePhosphoproteins

Identifiers

PMID24391764
PMCPMC3877032
OpenAlexW2153099519

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.