Evidence map›Paper›PMID 24391718›Full record

ArticlePloS one2013

Proteomic profiling of exosomes leads to the identification of novel biomarkers for prostate cancer.

Diederick Duijvesz, Kristin E Burnum-Johnson, Marina A Gritsenko, A Marije Hoogland, Mirella S Vredenbregt-van den Berg, Rob Willemsen, Theo Luider, Ljiljana Paša-Tolić, Guido Jenster

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 203 citations in OpenAlex.

  1. Trial
  2. Review
  3. 80 years of extracellular vesicles: from discovery to clinical translation.Extracellular vesicles and circulating nucleic acids · 2026
    Review
  4. Article
  5. Article
  6. Review
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  8. Article
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  12. Metabolic features of tumor-derived extracellular vesicles: challenges and opportunities.Extracellular vesicles and circulating nucleic acids · 2024
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Recent developments in biosensing methods for extracellular vesicle protein characterization.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology · 2023
    Review
  19. Article
  20. Characterization of Extracellular Vesicles in Osteoporotic Patients Compared to Osteopenic and Healthy Controls.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2022
    Article

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Diederick DuijveszDepartment of Urology, Erasmus Medical Center, Rotterdam, Netherlands.
Kristin E Burnum-JohnsonFundamental and Computational Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America.
Marina A GritsenkoFundamental and Computational Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America.
A Marije HooglandDepartment of Pathology, Erasmus Medical Center, Rotterdam, Netherlands.
Mirella S Vredenbregt-van den BergDepartment of Urology, Erasmus Medical Center, Rotterdam, Netherlands.
Rob WillemsenDepartment of Genetics, Erasmus Medical Center, Rotterdam, Netherlands.
Theo LuiderDepartment of Neurology, Erasmus Medical Center, Rotterdam, Netherlands.
Ljiljana Paša-TolićEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington, United States of America.
Guido JensterDepartment of Urology, Erasmus Medical Center, Rotterdam, Netherlands.
Erasmus MC · NLPacific Northwest National Laboratory · USEnvironmental Molecular Sciences Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCurrent markers for prostate cancer, such as PSA lack specificity. Therefore, novel biomarkers are needed. Unfortunately, the complexity of body fluids often hampers biomarker discovery. An attractive alternative approach is the isolation of small vesicles, i.e. exosomes, ∼100 nm, which contain proteins that are specific to the tissue from which they are derived and therefore can be considered as treasure chests for disease-specific biomarker discovery. MATERIALS AND

methodsExosomes were isolated from 2 immortalized primary prostate epithelial cells (PNT2C2 and RWPE-1) and 2 PCa cell lines (PC346C and VCaP) by ultracentrifugation. After tryptic digestion, proteomic analyses utilized a nanoLC coupled with an LTQ-Orbitrap operated in tandem MS (MS/MS) mode. Accurate Mass and Time (AMT) tag approach was employed for peptide identification and quantitation. Candidate biomarkers were validated by Western blotting and Immunohistochemistry.

resultsProteomic characterization resulted in the identification of 248, 233, 169, and 216 proteins by at least 2 peptides in exosomes from PNT2C2, RWPE-1, PC346C, and VCaP, respectively. Statistical analyses revealed 52 proteins differently abundant between PCa and control cells, 9 of which were more abundant in PCa. Validation by Western blotting confirmed a higher abundance of FASN, XPO1 and PDCD6IP (ALIX) in PCa exosomes.

conclusionsIdentification of exosomal proteins using high performance LC-FTMS resulted in the discovery of PDCD6IP, FASN, XPO1 and ENO1 as new candidate biomarkers for prostate cancer.

Indexed as

Biomarkers, TumorBlotting, WesternCalcium-Binding ProteinsCell Cycle ProteinsCell Line, TumorDNA-Binding ProteinsEndosomal Sorting Complexes Required for TransportExosomesExportin 1 ProteinFatty Acid Synthase, Type IHumansKaryopherinsMaleMicroscopy, Electron, TransmissionNeoplasm ProteinsPhosphopyruvate HydrataseBiomarkers, TumorCalcium-Binding ProteinsCell Cycle ProteinsDNA-Binding ProteinsEndosomal Sorting Complexes Required for TransportENO1 protein, humanExportin 1 ProteinFASN protein, humanFatty Acid Synthase, Type IKaryopherinsNeoplasm ProteinsPDCD6IP protein, humanPhosphopyruvate HydrataseReceptors, Cytoplasmic and NuclearTumor Suppressor Proteins

Identifiers

PMID24391718
PMCPMC3876995
OpenAlexW2064299227

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.