Evidence map›Paper›PMID 24391519›Full record

ArticlePLoS genetics2014

The candidate splicing factor Sfswap regulates growth and patterning of inner ear sensory organs.

Yalda Moayedi, Martin L Basch, Natasha L Pacheco, Simon S Gao, Rosalie Wang, Wilbur Harrison, Ningna Xiao, John S Oghalai, Paul A Overbeek, Graeme Mardon and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Knockout ofBiomedicines · 2024
    Article
  3. Review
  4. Article
  5. Article
  6. Alternative splicing in shaping the molecular landscape of the cochlea.Frontiers in cell and developmental biology · 2023
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Alternative Splicing ofNeural plasticity · 2020
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Yalda MoayediDepartment of Neuroscience, Baylor College of Medicine, Houston, Texas, United States of America.
Martin L BaschDepartment of Neuroscience, Baylor College of Medicine, Houston, Texas, United States of America.
Natasha L PachecoDepartment of Pathology, Baylor College of Medicine, Houston, Texas, United States of America.
Simon S GaoDepartment of Otolaryngology, Baylor College of Medicine, Houston, Texas, United States of America ; Department of Bioengineering, Rice University, Houston, Texas, United States of America ; Department of Otolaryngology, Stanford University School of Medicine, Palo Alto, California, United States.
Rosalie WangDepartment of Otolaryngology, Stanford University School of Medicine, Palo Alto, California, United States.
Wilbur HarrisonDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, United States of America.
Ningna XiaoDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, United States of America.
John S OghalaiDepartment of Otolaryngology, Baylor College of Medicine, Houston, Texas, United States of America ; Department of Otolaryngology, Stanford University School of Medicine, Palo Alto, California, United States.
Paul A OverbeekDepartment of Neuroscience, Baylor College of Medicine, Houston, Texas, United States of America ; Department of Pathology, Baylor College of Medicine, Houston, Texas, United States of America ; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, United States of America ; Program in Developmental Biology, Baylor College of Medicine, Houston, Texas, United States of America.
Graeme MardonDepartment of Pathology, Baylor College of Medicine, Houston, Texas, United States of America ; Program in Developmental Biology, Baylor College of Medicine, Houston, Texas, United States of America ; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.
Andrew K GrovesDepartment of Neuroscience, Baylor College of Medicine, Houston, Texas, United States of America ; Program in Developmental Biology, Baylor College of Medicine, Houston, Texas, United States of America ; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.
Baylor College of Medicine · USStanford University · USRice University · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
UNDERSTANDING FXTAS AMONG MALES WITH THE FMR1 PREMUTATIONP30HD024064 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI ZOGHBI, HUDA Y · 1988 to 2013
$29.4M
Genetic Regulation of Cochlear DevelopmentR01DC006185 · NIDCD · HOUSE RESEARCH INSTITUTE · PI GROVES, ANDREW K · 2003 to 2014
$3.6M
Molecular Mechanisms of Human Retinal DiseaseR01EY020540 · NEI · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI, MARDON, GRAEME · 2011 to 2017
$2.3M
Modulation of Cochlear TuningK08DC006671 · NIDCD · BAYLOR COLLEGE OF MEDICINE · PI OGHALAI, JOHN S · 2004 to 2008
$839k
NEI NIH HHS R01 EY020540NHGRI NIH HHS U54 HG003273NICHD NIH HHS NIH P30HD024064NICHD NIH HHS P30 HD024064NIDCD NIH HHS K08 DC006671NIDCD NIH HHS NIH DC006185NIDCD NIH HHS NIH DC006671NIDCD NIH HHS R01 DC006185PHS HHS NHGRI 2 U54 HG003273-04
6 · The paper itself

Abstract

The Notch signaling pathway is thought to regulate multiple stages of inner ear development. Mutations in the Notch signaling pathway cause disruptions in the number and arrangement of hair cells and supporting cells in sensory regions of the ear. In this study we identify an insertional mutation in the mouse Sfswap gene, a putative splicing factor, that results in mice with vestibular and cochlear defects that are consistent with disrupted Notch signaling. Homozygous Sfswap mutants display hyperactivity and circling behavior consistent with vestibular defects, and significantly impaired hearing. The cochlea of newborn Sfswap mutant mice shows a significant reduction in outer hair cells and supporting cells and ectopic inner hair cells. This phenotype most closely resembles that seen in hypomorphic alleles of the Notch ligand Jagged1 (Jag1). We show that Jag1; Sfswap compound mutants have inner ear defects that are more severe than expected from simple additive effects of the single mutants, indicating a genetic interaction between Sfswap and Jag1. In addition, expression of genes involved in Notch signaling in the inner ear are reduced in Sfswap mutants. There is increased interest in how splicing affects inner ear development and function. Our work is one of the first studies to suggest that a putative splicing factor has specific effects on Notch signaling pathway members and inner ear development.

Indexed as

Alternative SplicingAnimalsBody PatterningCalcium-Binding ProteinsCochleaEar, InnerHair Cells, Auditory, InnerIntercellular Signaling Peptides and ProteinsJagged-1 ProteinMembrane ProteinsMiceMutationReceptors, NotchRNA-Binding ProteinsRNA Splicing FactorsSerrate-Jagged ProteinsCalcium-Binding ProteinsIntercellular Signaling Peptides and ProteinsJAG1 protein, humanJag1 protein, mouseJagged-1 ProteinMembrane ProteinsReceptors, NotchRNA-Binding ProteinsRNA Splicing FactorsSerrate-Jagged ProteinsSfswap protein, mouse

Identifiers

PMID24391519
PMCPMC3879212
OpenAlexW2088544191

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.