Evidence map›Paper›PMID 24391470›Full record

ArticlePLoS biology2013

The velvet family of fungal regulators contains a DNA-binding domain structurally similar to NF-κB.

Yasar Luqman Ahmed, Jennifer Gerke, Hee-Soo Park, Özgür Bayram, Piotr Neumann, Min Ni, Achim Dickmanns, Sun Chang Kim, Jae-Hyuk Yu, Gerhard H Braus and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 147 citations in OpenAlex.

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32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Yasar Luqman AhmedDepartment of Molecular Structural Biology, Institute of Microbiology and Genetics, Georg-August University, Göttingen, Germany.
Jennifer GerkeDepartment of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics, Georg-August University, Göttingen, Germany.
Hee-Soo ParkDepartments of Bacteriology and Genetics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Özgür BayramDepartment of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics, Georg-August University, Göttingen, Germany.
Piotr NeumannDepartment of Molecular Structural Biology, Institute of Microbiology and Genetics, Georg-August University, Göttingen, Germany.
Min NiDepartments of Bacteriology and Genetics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Achim DickmannsDepartment of Molecular Structural Biology, Institute of Microbiology and Genetics, Georg-August University, Göttingen, Germany.
Sun Chang KimDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Dae-Jon, Republic of Korea.
Jae-Hyuk YuDepartments of Bacteriology and Genetics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Gerhard H BrausDepartment of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics, Georg-August University, Göttingen, Germany.
Ralf FicnerDepartment of Molecular Structural Biology, Institute of Microbiology and Genetics, Georg-August University, Göttingen, Germany.
University of Göttingen · DEUniversity of Wisconsin–Madison · USKorea Advanced Institute of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Morphological development of fungi and their combined production of secondary metabolites are both acting in defence and protection. These processes are mainly coordinated by velvet regulators, which contain a yet functionally and structurally uncharacterized velvet domain. Here we demonstrate that the velvet domain of VosA is a novel DNA-binding motif that specifically recognizes an 11-nucleotide consensus sequence consisting of two motifs in the promoters of key developmental regulatory genes. The crystal structure analysis of the VosA velvet domain revealed an unforeseen structural similarity with the Rel homology domain (RHD) of the mammalian transcription factor NF-κB. Based on this structural similarity several conserved amino acid residues present in all velvet domains have been identified and shown to be essential for the DNA binding ability of VosA. The velvet domain is also involved in dimer formation as seen in the solved crystal structures of the VosA homodimer and the VosA-VelB heterodimer. These findings suggest that defence mechanisms of both fungi and animals might be governed by structurally related DNA-binding transcription factors.

Indexed as

Aspergillus nidulansConsensus SequenceDNA-Binding ProteinsDNA, FungalGene Expression Regulation, DevelopmentalGene Expression Regulation, FungalGenes, FungalGenes, relNF-kappa BDNA-Binding ProteinsDNA, FungalNF-kappa B

Identifiers

PMID24391470
PMCPMC3876986
OpenAlexW2001057820

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.