Evidence map›Paper›PMID 24390833›Full record

ArticleJournal of microbiology (Seoul, Korea)2014

Molecular characterization of the alpha subunit of multicomponent phenol hydroxylase from 4-chlorophenol-degrading Pseudomonas sp. strain PT3.

Wael S El-Sayed, Mohamed K Ibrahim, Salama A Ouf

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Article in Journal of microbiology (Seoul, Korea), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Wael S El-SayedBiology Department, Faculty of Science, Taibah University, 344, Almadinah Almunwarrah, KSA, waelsme@yahoo.com.
Mohamed K Ibrahim
Salama A Ouf

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multicomponent phenol hydroxylases (mPHs) are diiron enzymes that use molecular oxygen to hydroxylate a variety of phenolic compounds. The DNA sequence of the alpha subunit (large subunit) of mPH from 4-chlorophenol (4-CP)-degrading bacterial strain PT3 was determined. Strain PT3 was isolated from oil-contaminated soil samples adjacent to automobile workshops and oil stations after enrichment and establishment of a chlorophenol-degrading consortium. Strain PT3 was identified as a member of Pseudomonas sp. based on sequence analysis of the 16S rRNA gene fragment. The 4-CP catabolic pathway by strain PT3 was tentatively proposed to proceed via a meta-cleavage pathway after hydroxylation to the corresponding chlorocatechol. This hypothesis was supported by polymerase chain reaction (PCR) detection of the LmPH encoding sequence and UV/VIS spectrophotometric analysis of the culture filtrate showing accumulation of 5-chloro-2-hydroxymuconic semialdehyde (5-CHMS) with λmax 380. The detection of catabolic genes involved in 4-CP degradation by PCR showed the presence of both mPH and catechol 2,3-dioxygenase (C23DO). Nucleotide sequence analysis of the alpha subunit of mPH from strain PT3 revealed specific phylogenetic grouping to known mPH. The metal coordination encoding regions from strain PT3 were found to be conserved with those from the homologous dinuclear oxo-iron bacterial monooxygenases. Two DE(D)XRH motifs was detected in LmPH of strain PT3 within an approximate 100 amino acid interval, a typical arrangement characteristic of most known PHs.

Indexed as

Amino Acid SequenceBase SequenceChlorophenolsCluster AnalysisDNA, BacterialDNA, RibosomalMetabolic Networks and PathwaysMixed Function OxygenasesMolecular Sequence DataPhylogenyProtein SubunitsPseudomonasRNA, Ribosomal, 16SSequence Analysis, DNASoil MicrobiologySorbic Acid2-hydroxy-5-chloromuconic acid semialdehyde4-chlorophenolChlorophenolsDNA, BacterialDNA, RibosomalMixed Function Oxygenasesphenol 2-monooxygenaseProtein SubunitsRNA, Ribosomal, 16SSorbic Acid

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.