Evidence map›Paper›PMID 24390738›Full record

ArticleCancer research2014

The transcriptional regulatory network of proneural glioma determines the genetic alterations selected during tumor progression.

Adam M Sonabend, Mukesh Bansal, Paolo Guarnieri, Liang Lei, Benjamin Amendolara, Craig Soderquist, Richard Leung, Jonathan Yun, Benjamin Kennedy, Julia Sisti and 9 more

Abstract read
In one paragraph

Article in Cancer research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 60 citations in OpenAlex.

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  12. Pathway Analysis for Cancer Research and Precision Oncology Applications.Advances in experimental medicine and biology · 2022
    Article
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  17. CD8Clinical cancer research : an official journal of the American Association for Cancer Research · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 3 countries.

Adam M Sonabend *Gabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Mukesh Bansal *Department of Systems Biology, Columbia University, New York, NY.
Paolo GuarnieriDepartment of Systems Biology, Columbia University, New York, NY.
Liang LeiDepartment of Pathology and Cell Biology, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Benjamin AmendolaraGabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Craig SoderquistDepartment of Pathology and Cell Biology, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Richard LeungDepartment of Pathology and Cell Biology, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Jonathan YunGabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Benjamin KennedyGabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Julia SistiGabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Samuel BruceGabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Rachel BruceGabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Reena ShakyaDepartment of Molecular and Cellular Biochemistry, The Ohio State University Medical Center, Columbus, OH.
Thomas LudwigDepartment of Molecular and Cellular Biochemistry, The Ohio State University Medical Center, Columbus, OH.
Steven RosenfeldBrain Tumor and Neuro-Oncology Center, Cleveland Clinic, Cleveland, OH.
Peter A SimsDepartment of Systems Biology, Columbia University, New York, NY.
Jeffrey N BruceGabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Andrea CalifanoDepartment of Systems Biology, Columbia University, New York, NY.
Peter CanollGabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, NY.
Cancer Genetics (United States) · USColumbia University Irving Medical Center · USCleveland Clinic · USInstitute of Bioinformatics · INThe Ohio State University Wexner Medical Center · USColumbia University · US

Funding

Targeting Kif11 to Treat Glioblastoma Invasion and ProliferationR01NS073610 · NINDS · MAYO CLINIC JACKSONVILLE · PI CANOLL, PETER, ELMQUIST, WILLIAM · 2012 to 2021
$4.3M
Computational analysis of Human High Grade GliomasR01NS061776 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IAVARONE, ANTONIO · 2009 to 2013
$2.4M
The Role of White Matter Progenitors in Glioma Formation and ProgressionR01NS066955 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CANOLL, PETER · 2010 to 2014
$1.7M
A Microfluidic System for Image-Guided RNA-Seq of Single Cells in GlioblastomaK01EB016071 · NIBIB · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SIMS, PETER ALAN · 2012 to 2016
$863k
NIBIB NIH HHS 1K01EB016071NIBIB NIH HHS K01 EB016071NINDS NIH HHS 1R01NS066955NINDS NIH HHS R01 NS061776NINDS NIH HHS R01 NS066955NINDS NIH HHS R01 NS073610
6 · The paper itself

Abstract

Proneural glioblastoma is defined by an expression pattern resembling that of oligodendrocyte progenitor cells and carries a distinctive set of genetic alterations. Whether there is a functional relationship between the proneural phenotype and the associated genetic alterations is unknown. To evaluate this possible relationship, we performed a longitudinal molecular characterization of tumor progression in a mouse model of proneural glioma. In this setting, the tumors acquired remarkably consistent genetic deletions at late stages of progression, similar to those deleted in human proneural glioblastoma. Further investigations revealed that p53 is a master regulator of the transcriptional network underlying the proneural phenotype. This p53-centric transcriptional network and its associated phenotype were observed at both the early and late stages of progression, and preceded the proneural-specific deletions. Remarkably, deletion of p53 at the time of tumor initiation obviated the acquisition of later deletions, establishing a link between the proneural transcriptional network and the subtype-specific deletions selected during glioma progression.

Indexed as

AnimalsCell Line, TumorDisease ProgressionGene DeletionGene Expression Regulation, NeoplasticGene Regulatory NetworksGliomaHumansMiceTumor Suppressor Protein p53Tumor Suppressor Protein p53

Identifiers

PMID24390738
PMCPMC3981545
OpenAlexW2147422786

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.