Evidence map›Paper›PMID 24390440›Full record

ArticleNature methods2014

Optimized ratiometric calcium sensors for functional in vivo imaging of neurons and T lymphocytes.

Thomas Thestrup, Julia Litzlbauer, Ingo Bartholomäus, Marsilius Mues, Luigi Russo, Hod Dana, Yuri Kovalchuk, Yajie Liang, Georgios Kalamakis, Yvonne Laukat and 10 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature methods, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 195 papers.

0numbers the graph read from it
0cells of the map it votes in
195citing papers in PubMed
14.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

195 citing papers in PubMed, 371 citations in OpenAlex.

  1. Monitoring Calcium Dynamics in Pig Intestinal Organoids with FLIM and FRET.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Intracellular CaBiologia futura · 2025
    Review
  13. Article
  14. Structure Prediction of Alternate Frame Folding Systems with AlphaFold3.Journal of chemical information and modeling · 2025
    Article
  15. Article
  16. Review
  17. Regulatory Action of Calcium and Calcium Channels in Pain Pathways.International journal of biological sciences · 2025
    Review
  18. Review
  19. Article
  20. Autonomous multicolor bioluminescence imaging in bacteria, mammalian, and plant hosts.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article

135 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 2 countries.

Thomas Thestrup1] Max Planck Institute of Neurobiology, Martinsried, Germany. [2] Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.
Julia LitzlbauerMax Planck Institute of Neurobiology, Martinsried, Germany.
Ingo BartholomäusMax Planck Institute of Neurobiology, Martinsried, Germany.
Marsilius MuesMax Planck Institute of Neurobiology, Martinsried, Germany.
Luigi RussoMax Planck Institute for Biophysical Chemistry, NMR-based Structural Biology, Göttingen, Germany.
Hod DanaJanelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.
Yuri KovalchukInstitute of Physiology II, University of Tübingen, Tübingen, Germany.
Yajie LiangInstitute of Physiology II, University of Tübingen, Tübingen, Germany.ORCID 0000000247984882
Georgios KalamakisInstitute of Physiology II, University of Tübingen, Tübingen, Germany.
Yvonne LaukatMax Planck Institute for Biophysical Chemistry, NMR-based Structural Biology, Göttingen, Germany.
Stefan BeckerMax Planck Institute for Biophysical Chemistry, NMR-based Structural Biology, Göttingen, Germany.
Gregor WitteGene Center, Department of Biochemistry, University of Munich, Munich, Germany.ORCID 0000000303130962
Anselm GeigerMax Planck Institute of Neurobiology, Martinsried, Germany.
Taylor AllenOberlin College, Oberlin, Ohio, USA.ORCID 000000033018187X
Lawrence C Rome1] Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA. [2] The Whitman Center, Marine Biological Lab, Woods Hole, Massachusetts, USA.
Tsai-Wen ChenJanelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.
Douglas S KimJanelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.
Olga GaraschukInstitute of Physiology II, University of Tübingen, Tübingen, Germany.
Christian GriesingerMax Planck Institute for Biophysical Chemistry, NMR-based Structural Biology, Göttingen, Germany.
Oliver Griesbeck1] Max Planck Institute of Neurobiology, Martinsried, Germany. [2] Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.
Howard Hughes Medical Institute · USMax Planck Institute for Biophysical Chemistry · DEMax Planck Institute of Neurobiology · DEUniversity of Tübingen · DEJanelia Research Campus · USLudwig-Maximilians-Universität München · DEMarine Biological Laboratory · USOberlin College · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

The quality of genetically encoded calcium indicators (GECIs) has improved dramatically in recent years, but high-performing ratiometric indicators are still rare. Here we describe a series of fluorescence resonance energy transfer (FRET)-based calcium biosensors with a reduced number of calcium binding sites per sensor. These 'Twitch' sensors are based on the C-terminal domain of Opsanus troponin C. Their FRET responses were optimized by a large-scale functional screen in bacterial colonies, refined by a secondary screen in rat hippocampal neuron cultures. We tested the in vivo performance of the most sensitive variants in the brain and lymph nodes of mice. The sensitivity of the Twitch sensors matched that of synthetic calcium dyes and allowed visualization of tonic action potential firing in neurons and high resolution functional tracking of T lymphocytes. Given their ratiometric readout, their brightness, large dynamic range and linear response properties, Twitch sensors represent versatile tools for neuroscience and immunology.

Indexed as

AnimalsAnimals, NewbornBiosensing TechniquesCalciumFluorescence Resonance Energy TransferFluorescent DyesHEK293 CellsHippocampusHumansImage Processing, Computer-AssistedLuminescent ProteinsLymphocyte ActivationMagnetic Resonance SpectroscopyMiceMice, Inbred C57BLMicroscopy, FluorescenceCalciumFluorescent DyesLuminescent ProteinsTroponin C

Identifiers

PMID24390440
OpenAlexW1987278178

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.