Evidence map›Paper›PMID 24389048›Full record

ArticleGenome research2014

Transcriptome analysis reveals novel players in the cranial neural crest gene regulatory network.

Marcos Simões-Costa, Joanne Tan-Cabugao, Igor Antoshechkin, Tatjana Sauka-Spengler, Marianne E Bronner

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 118 citations in OpenAlex.

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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Marcos Simões-CostaDivision of Biology, California Institute of Technology, Pasadena, California 91125, USA;
Joanne Tan-Cabugao
Igor Antoshechkin
Tatjana Sauka-Spengler
Marianne E Bronner
California Institute of Technology · USUniversity of Oxford · GB

Funding

Transcriptional Casualty in Embryonic Morphogenesis: from the Specifications GRNP01HD037105 · NICHD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI DAVIDSON, ERIC H · 1999 to 2018
$27.1M
Ectodermal Placode Development into Sensory StructuresR01DE016459 · NIDCR · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI BRONNER, MARIANNE · 2004 to 2014
$3.8M
Medical Research Council G0902418NICHD NIH HHS HD037105NICHD NIH HHS P01 HD037105NIDCR NIH HHS DE16459NIDCR NIH HHS R01 DE016459
6 · The paper itself

Abstract

The neural crest is an embryonic stem cell population that gives rise to a multitude of derivatives. In particular, the cranial neural crest (CNC) is unique in its ability to contribute to both facial skeleton and peripheral ganglia. To gain further insight into the molecular underpinnings that distinguish the CNC from other embryonic tissues, we have utilized a CNC-specific enhancer as a tool to isolate a pure, region-specific NC subpopulation for transcriptional profiling. The resulting data set reveals previously unknown transcription factors and signaling pathways that may influence the CNC's ability to migrate and/or differentiate into unique derivatives. To elaborate on the CNC gene regulatory network, we evaluated the effects of knocking down known neural plate border genes and early neural crest specifier genes on selected neural crest-enriched transcripts. The results suggest that ETS1 and SOX9 may act as pan-neural crest regulators of the migratory CNC. Taken together, our analysis provides unprecedented characterization of the migratory CNC transcriptome and identifies new links in the gene regulatory network responsible for development of this critical cell population.

Indexed as

Gene Regulatory NetworksAnimalsChick EmbryoEmbryonic Stem CellsGene Expression ProfilingGene Expression Regulation, DevelopmentalGenomeNeural CrestProto-Oncogene Protein c-ets-1Signal TransductionSkullSOX9 Transcription FactorProto-Oncogene Protein c-ets-1SOX9 Transcription Factor

Identifiers

PMID24389048
PMCPMC3912418
OpenAlexW2042752490

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.