Evidence map›Paper›PMID 24388749›Full record

ArticleCell reports2014

Regulation of the apolipoprotein gene cluster by a long noncoding RNA.

Paul Halley, Beena M Kadakkuzha, Mohammad Ali Faghihi, Marco Magistri, Zane Zeier, Olga Khorkova, Carlos Coito, Jane Hsiao, Matthew Lawrence, Claes Wahlestedt

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed, 2 pooled it
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 2 syntheses or guidelines pooled it, 202 citations in OpenAlex.

  1. Pooled it
  2. Effect of 9p21.3 (lncRNA and CDKN2A/2B) variant on lipid profile.Frontiers in cardiovascular medicine · 2022
    Pooled it
  3. Observational
  4. Review
  5. Article
  6. Article
  7. Mechanistic study of antisense long non-coding RNAExploration of targeted anti-tumor therapy · 2026
    Article
  8. Advances in the Regulation of Lipid Metabolism by Non-Coding RNAs.Animals : an open access journal from MDPI · 2025
    Review
  9. The Multifaceted Roles ofNon-coding RNA · 2025
    Review
  10. Article
  11. Review
  12. Biomedicines · 2024
    Review
  13. Current RNA strategies in treating cardiovascular diseases.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Review
  14. Review
  15. [Research progress of long-chain non-coding RNA in lipid metabolism reprogramming in primary hepatocellular carcinoma].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2024
    Article
  16. Expression ofFrontiers in oncology · 2024
    Article
  17. Article
  18. Article
  19. Review
  20. Review

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Paul HalleyCenter for Therapeutic Innovation, University of Miami, Miller School of Medicine, NW 10(th) Avenue, Miami, FL 33136, USA; Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami, NW 10(th) Avenue, Miami, FL 33136, USA.
Beena M KadakkuzhaCenter for Therapeutic Innovation, University of Miami, Miller School of Medicine, NW 10(th) Avenue, Miami, FL 33136, USA; Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami, NW 10(th) Avenue, Miami, FL 33136, USA.
Mohammad Ali FaghihiCenter for Therapeutic Innovation, University of Miami, Miller School of Medicine, NW 10(th) Avenue, Miami, FL 33136, USA; Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami, NW 10(th) Avenue, Miami, FL 33136, USA.
Marco MagistriCenter for Therapeutic Innovation, University of Miami, Miller School of Medicine, NW 10(th) Avenue, Miami, FL 33136, USA; Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami, NW 10(th) Avenue, Miami, FL 33136, USA.
Zane ZeierCenter for Therapeutic Innovation, University of Miami, Miller School of Medicine, NW 10(th) Avenue, Miami, FL 33136, USA; Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami, NW 10(th) Avenue, Miami, FL 33136, USA.
Olga KhorkovaOPKO-CURNA, 10320 USA Today Way, Miramar, FL 33025, USA.
Carlos CoitoOPKO-CURNA, 10320 USA Today Way, Miramar, FL 33025, USA.
Jane HsiaoOPKO-CURNA, 10320 USA Today Way, Miramar, FL 33025, USA.
Matthew LawrenceRxGen, Inc., 100 Deepwood Drive, Hamden, CT 06517, USA.
Claes WahlestedtCenter for Therapeutic Innovation, University of Miami, Miller School of Medicine, NW 10(th) Avenue, Miami, FL 33136, USA; Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami, NW 10(th) Avenue, Miami, FL 33136, USA. Electronic address: cwahlestedt@med.miami.edu.
University of Miami · USOPKO Health (United States) · US

Funding

Comprehensive analysis of the FMR1 locus transcriptional landscapeR01MH084880 · NIMH · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI WAHLESTEDT, CLAES ROBERT · 2010 to 2014
$2.0M
Role of noncoding RNAs in schizophreniaR01MH083733 · NIMH · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI WAHLESTEDT, CLAES ROBERT · 2008 to 2012
$2.0M
Regulatory RNAs as mediators and biomarkers in Alzheimer's DiseaseR01NS063974 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI WAHLESTEDT, CLAES ROBERT · 2009 to 2012
$1.6M
NIMH NIH HHS R01 MH083733NIMH NIH HHS R01 MH084880NINDS NIH HHS R01 NS063974
6 · The paper itself

Abstract

Apolipoprotein A1 (APOA1) is the major protein component of high-density lipoprotein (HDL) in plasma. We have identified an endogenously expressed long noncoding natural antisense transcript, APOA1-AS, which acts as a negative transcriptional regulator of APOA1 both in vitro and in vivo. Inhibition of APOA1-AS in cultured cells resulted in the increased expression of APOA1 and two neighboring genes in the APO cluster. Chromatin immunoprecipitation (ChIP) analyses of a ∼50 kb chromatin region flanking the APOA1 gene demonstrated that APOA1-AS can modulate distinct histone methylation patterns that mark active and/or inactive gene expression through the recruitment of histone-modifying enzymes. Targeting APOA1-AS with short antisense oligonucleotides also enhanced APOA1 expression in both human and monkey liver cells and induced an increase in hepatic RNA and protein expression in African green monkeys. Furthermore, the results presented here highlight the significant local modulatory effects of long noncoding antisense RNAs and demonstrate the therapeutic potential of manipulating the expression of these transcripts both in vitro and in vivo.

Indexed as

Protein Processing, Post-TranslationalAnimalsApolipoprotein A-ICells, CulturedChlorocebus aethiopsHepatocytesHep G2 CellsHistonesHumansMethylationRNA, AntisenseRNA, Long NoncodingVero CellsAPOA1 protein, humanApolipoprotein A-IHistonesRNA, AntisenseRNA, Long Noncoding

Identifiers

PMID24388749
PMCPMC3924898
OpenAlexW2112059119

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.