Evidence map›Paper›PMID 24388515›Full record

ArticlePlant science : an international journal of experimental plant biology2014

Fruit specific variability in capsaicinoid accumulation and transcription of structural and regulatory genes in Capsicum fruit.

Neda Keyhaninejad, Jeanne Curry, Joslynn Romero, Mary A O'Connell

Open access · greenAbstract read
In one paragraph

Article in Plant science : an international journal of experimental plant biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 51 citations in OpenAlex.

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  14. Discovery of novel unfunctionalBreeding science · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Neda KeyhaninejadDepartment of Plant and Environmental Sciences, New Mexico State University, Las Cruces, NM 88003, USA.
Jeanne CurryDepartment of Plant and Environmental Sciences, New Mexico State University, Las Cruces, NM 88003, USA.
Joslynn RomeroDepartment of Plant and Environmental Sciences, New Mexico State University, Las Cruces, NM 88003, USA.
Mary A O'ConnellDepartment of Plant and Environmental Sciences, New Mexico State University, Las Cruces, NM 88003, USA. Electronic address: moconnel@nmsu.edu.
New Mexico State University · US

Funding

Translational Control in the Hepatitis C VirusS06GM008136 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI KUEHN, GLENN D · 1989 to 2011
$23.2M
RISE PROGRAM AT NEW MEXICO STATE UNIVERSITYR25GM061222 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI HOUSTON, JESSICA PEREA, REDDI, LAKSHMI · 2000 to 2022
$21.3M
TRAINING IN CELL AND MOLECULAR BIOLOGYT32GM008136 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI STUKENBERG, P. TODD · 1985 to 2020
$8.5M
NIGMS NIH HHS GM61222NIGMS NIH HHS R25 GM061222NIGMS NIH HHS S06 GM008136NIGMS NIH HHS S06 GM08136NIGMS NIH HHS T32 GM008136
6 · The paper itself

Abstract

Accumulation of capsaicinoids in the placental tissue of ripening chile (Capsicum spp.) fruit follows the coordinated expression of multiple biosynthetic enzymes producing the substrates for capsaicin synthase. Transcription factors are likely agents to regulate expression of these biosynthetic genes. Placental RNAs from habanero fruit (Capsicum chinense) were screened for expression of candidate transcription factors; with two candidate genes identified, both in the ERF family of transcription factors. Characterization of these transcription factors, Erf and Jerf, in nine chile cultivars with distinct capsaicinoid contents demonstrated a correlation of expression with pungency. Amino acid variants were observed in both ERF and JERF from different chile cultivars; none of these changes involved the DNA binding domains. Little to no transcription of Erf was detected in non-pungent Capsium annuum or C. chinense mutants. This correlation was characterized at an individual fruit level in a set of jalapeño (C. annuum) lines again with distinct and variable capsaicinoid contents. Both Erf and Jerf are expressed early in fruit development, 16-20 days post-anthesis, at times prior to the accumulation of capsaicinoids in the placental tissues. These data support the hypothesis that these two members of the complex ERF family participate in regulation of the pungency phenotype in chile.

Indexed as

Gene Expression Regulation, PlantGenes, PlantPolymorphism, GeneticAmino AcidsAmino Acid SequenceCapsaicinCapsicumDNA-Binding ProteinsFruitMolecular Sequence DataPhenotypePlant DevelopmentPlant ProteinsRNATranscription FactorsTranscription, GeneticAmino AcidsCapsaicinDNA-Binding Proteinsethylene-responsive element binding proteinPlant ProteinsRNATranscription FactorsCapsaicinoidsCapsicumFruit pungencyTranscription factors

Identifiers

PMID24388515
PMCPMC3882758
OpenAlexW2011330883

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.