Evidence map›Paper›PMID 24388013›Full record

ArticleThe Journal of allergy and clinical immunology2014

Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.

Manuel A R Ferreira, Melanie C Matheson, Clara S Tang, Raquel Granell, Wei Ang, Jennie Hui, Amy K Kiefer, David L Duffy, Svetlana Baltic, Patrick Danoy and 25 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed, 11 pooled it
13.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 11 syntheses or guidelines pooled it, 217 citations in OpenAlex.

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  7. Single nucleotide polymorphisms of IL-13 and CD14 genes in allergic rhinitis: a meta-analysis.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2018
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  20. Genetics of chronic respiratory disease.Nature reviews. Genetics · 2024
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53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 17 institutions in 5 countries.

Manuel A R FerreiraQIMR Berghofer Medical Research Institute, Brisbane, Australia. Electronic address: manuel.ferreira@qimrberghofer.edu.au.
Melanie C MathesonMelbourne School of Population and Global Health, University of Melbourne, Melbourne, Australia.
Clara S TangQIMR Berghofer Medical Research Institute, Brisbane, Australia; Departments of Psychiatry, Surgery, and Medicine, Centre for Genomic Sciences, University of Hong Kong, Hong Kong, China.
Raquel GranellSchool of Social and Community Medicine, University of Bristol, Bristol, United Kingdom.
Wei AngSchool of Women's and Infant's Health, University of Western Australia, Subiaco, Australia.
Jennie HuiPathWest Laboratory Medicine of Western Australia, Nedlands, Australia; School of Population Health, University of Western Australia, Nedlands, Australia; School of Pathology and Laboratory Medicine, University of Western Australia, Nedlands, Australia; Busselton Population Medical Research Foundation, Sir Charles Gairdner Hospital, Perth, Australia.
Amy K Kiefer23andMe, Mountain View, Calif.
David L DuffyQIMR Berghofer Medical Research Institute, Brisbane, Australia.
Svetlana BalticLung Institute of Western Australia and Centre for Asthma, Allergy and Respiratory Research, University of Western Australia, Perth, Australia.
Patrick DanoyUniversity of Queensland Diamantina Institute, Translational Research Institute, Brisbane, Australia.
Minh BuiMelbourne School of Population and Global Health, University of Melbourne, Melbourne, Australia.
Loren PriceLung Institute of Western Australia and Centre for Asthma, Allergy and Respiratory Research, University of Western Australia, Perth, Australia.
Peter D SlyQueensland Children's Medical Research Institute, Royal Children's Hospital, Brisbane, Australia.
Nicholas Eriksson23andMe, Mountain View, Calif.
Pamela A MaddenDepartment of Psychiatry, Washington University School, of Medicine, St Louis, Mo.
Michael J AbramsonDepartment of Epidemiology & Preventive Medicine, Monash University, Melbourne, Australia.
Patrick G HoltTelethon Institute of Child Health Research, University of Western Australia, Subiaco, Australia.
Andrew C HeathDepartment of Psychiatry, Washington University School, of Medicine, St Louis, Mo.
Michael HunterSchool of Population Health, University of Western Australia, Nedlands, Australia; Busselton Population Medical Research Foundation, Sir Charles Gairdner Hospital, Perth, Australia.
Bill MuskSchool of Population Health, University of Western Australia, Nedlands, Australia; Busselton Population Medical Research Foundation, Sir Charles Gairdner Hospital, Perth, Australia; School of Medicine and Pharmacology, University of Western Australia, Nedlands, Australia; Department of Respiratory Medicine, Sir Charles Gairdner Hospital, Perth, Australia.
Colin F RobertsonRespiratory Medicine, Murdoch Children's Research Institute, Melbourne, Australia.
Peter Le SouëfSchool of Paediatrics and Child Health, Princess Margaret Hospital for Children, Perth, Australia.
Grant W MontgomeryQIMR Berghofer Medical Research Institute, Brisbane, Australia.
A John HendersonSchool of Social and Community Medicine, University of Bristol, Bristol, United Kingdom.
Joyce Y Tung23andMe, Mountain View, Calif.
Shyamali C DharmageMelbourne School of Population and Global Health, University of Melbourne, Melbourne, Australia.
Matthew A BrownUniversity of Queensland Diamantina Institute, Translational Research Institute, Brisbane, Australia.
Alan JamesBusselton Population Medical Research Foundation, Sir Charles Gairdner Hospital, Perth, Australia; School of Medicine and Pharmacology, University of Western Australia, Nedlands, Australia; Department of Pulmonary Physiology, West Australian Sleep Disorders Research Institute, Nedlands, Australia.
Philip J ThompsonLung Institute of Western Australia and Centre for Asthma, Allergy and Respiratory Research, University of Western Australia, Perth, Australia.
Craig PennellSchool of Women's and Infant's Health, University of Western Australia, Subiaco, Australia.
Nicholas G MartinQIMR Berghofer Medical Research Institute, Brisbane, Australia.
David M EvansSchool of Social and Community Medicine, University of Bristol, Bristol, United Kingdom; Medical Research Council (MRC) Centre for Causal Analyses in Translational Epidemiology, University of Bristol, Bristol, United Kingdom.
David A Hinds23andMe, Mountain View, Calif.
John L HopperMelbourne School of Population and Global Health, University of Melbourne, Melbourne, Australia. Electronic address: j.hopper@unimelb.edu.au.
Australian Asthma Genetics Consortium Collaborators
23andMe (United States) · USQIMR Berghofer Medical Research Institute · AUUniversity of Melbourne · AUUniversity of Western Australia · AUSir Charles Gairdner Hospital · AUUniversity of Bristol · GBWashington University in St. Louis · USInstitute for Respiratory Health · AUMonash University · AUMurdoch Children's Research Institute · AUPathwest Laboratory Medicine · AUPrincess Margaret Hospital for Children · AUQueensland Children’s Medical Research Institute · AUThe Kids Research Institute Australia · AUTranslational Research Institute · AUUniversity of Hong Kong · HKUniversity of Queensland · AU

Funding

PILOT--GENETIC EPIDEMIOLOGY OF ALCOHOL AND TOBACCO CONSUMPTION IN CHINESE SAMPLEP50AA011998 · NIAAA · WASHINGTON UNIVERSITY · PI SHER, KENNETH JAMES · 1999 to 2008
$12.6M
THE GENETICS OF VULNERABILITY TO NICOTINE ADDICTIONSR01DA012854 · NIDA · WASHINGTON UNIVERSITY · PI MADDEN, PAMELA ANN · 2000 to 2013
$10.4M
Resource CoreP60AA011998 · NIAAA · WASHINGTON UNIVERSITY · PI MADDEN, PAMELA ANN · 2009 to 2013
$8.8M
Molecular Epidemiology of Alcoholism 3 - EDAC FamiliesR01AA013321 · NIAAA · WASHINGTON UNIVERSITY · PI HEATH, ANDREW C. · 2001 to 2005
$4.3M
RESEARCH EDUCATION PROGRAM ON COMPUTATIONAL AND STATISTICAL TOOL DEVELOPMENT FOR ADDICTION GENETICSR25DA027995 · NIDA · WASHINGTON UNIVERSITY · PI MADDEN, PAMELA ANN, RICE, JOHN P. · 2009 to 2019
$4.3M
Molecular Epidemiology of Alcoholism 2- Big SibshipsR01AA013320 · NIAAA · WASHINGTON UNIVERSITY · PI HEATH, ANDREW C. · 2003 to 2007
$3.1M
Genetic Epidemiology of Pathological GamblingR01MH066206 · NIMH · UNIVERSITY OF MISSOURI-COLUMBIA · PI SLUTSKE, WENDY S · 2003 to 2007
$2.5M
Genetic Epideniologic Models of Alcohol AbuseR37AA007728 · NIAAA · WASHINGTON UNIVERSITY · PI HEATH, ANDREW C. · 1998 to 2007
$2.2M
Molecular Epidemiology of Alcoholism 1: Candidate GeneR01AA013326 · NIAAA · QUEENSLAND INSTITUTE OF MEDICAL RESEARCH · PI MARTIN, NICHOLAS G · 2001 to 2005
$2.1M
VARIATION IN THE EFFECTS OF ALCOHOL ON LIVER FUNCTIONR01AA014041 · NIAAA · QUEENSLAND INSTITUTE OF MEDICAL RESEARCH · PI WHITFIELD, JOHN B · 2003 to 2007
$2.1M
GENE-ENVIRONMENT INTERPLAY IN ALCOHOLISMK05AA017688 · NIAAA · WASHINGTON UNIVERSITY · PI HEATH, ANDREW C. · 2008 to 2017
$1.9M
The Genetics of Vulnerability to Nicotine AddictionsR56DA012854 · NIDA · WASHINGTON UNIVERSITY · PI MADDEN, PAMELA ANN · 2007 to 2007
$436k
CIHR MOP-82893Medical Research Council MC_PC_15018Medical Research Council MC_UU_12013/4NHLBI NIH HHS R43 HL115873NIAAA NIH HHS AA07728NIAAA NIH HHS AA10248NIAAA NIH HHS AA11998NIAAA NIH HHS AA13320NIAAA NIH HHS AA13321NIAAA NIH HHS AA13326NIAAA NIH HHS AA14041NIAAA NIH HHS AA17688NIAAA NIH HHS K05 AA017688NIAAA NIH HHS P50 AA011998NIAAA NIH HHS P60 AA011998NIAAA NIH HHS R01 AA007535NIAAA NIH HHS R01 AA007728NIAAA NIH HHS R01 AA010249NIAAA NIH HHS R01 AA013320NIAAA NIH HHS R01 AA013321NIAAA NIH HHS R01 AA013326NIAAA NIH HHS R01 AA014041NIAAA NIH HHS R37 AA007728NIDA NIH HHS DA12854NIDA NIH HHS R01 DA012854NIDA NIH HHS R25 DA027995NIDA NIH HHS R56 DA012854NIMH NIH HHS MH66206NIMH NIH HHS R01 MH066206Wellcome Trust
6 · The paper itself

Abstract

backgroundTo date, no genome-wide association study (GWAS) has considered the combined phenotype of asthma with hay fever. Previous analyses of family data from the Tasmanian Longitudinal Health Study provide evidence that this phenotype has a stronger genetic cause than asthma without hay fever.

objectiveWe sought to perform a GWAS of asthma with hay fever to identify variants associated with having both diseases.

methodsWe performed a meta-analysis of GWASs comparing persons with both physician-diagnosed asthma and hay fever (n = 6,685) with persons with neither disease (n = 14,091).

resultsAt genome-wide significance, we identified 11 independent variants associated with the risk of having asthma with hay fever, including 2 associations reaching this level of significance with allergic disease for the first time: ZBTB10 (rs7009110; odds ratio [OR], 1.14; P = 4 × 10(-9)) and CLEC16A (rs62026376; OR, 1.17; P = 1 × 10(-8)). The rs62026376:C allele associated with increased asthma with hay fever risk has been found to be associated also with decreased expression of the nearby DEXI gene in monocytes. The 11 variants were associated with the risk of asthma and hay fever separately, but the estimated associations with the individual phenotypes were weaker than with the combined asthma with hay fever phenotype. A variant near LRRC32 was a stronger risk factor for hay fever than for asthma, whereas the reverse was observed for variants in/near GSDMA and TSLP. Single nucleotide polymorphisms with suggestive evidence for association with asthma with hay fever risk included rs41295115 near IL2RA (OR, 1.28; P = 5 × 10(-7)) and rs76043829 in TNS1 (OR, 1.23; P = 2 × 10(-6)).

conclusionBy focusing on the combined phenotype of asthma with hay fever, variants associated with the risk of allergic disease can be identified with greater efficiency.

Indexed as

Genetic VariationGenome-Wide Association StudyPhenotypeQuantitative Trait LociAdultAllelesAsthmaFemaleGene FrequencyHumansLectins, C-TypeLinkage DisequilibriumMaleMiddle AgedMonosaccharide Transport ProteinsOdds RatioCLEC16A protein, humanLectins, C-TypeMonosaccharide Transport ProteinsRepressor ProteinsZBTB10 protein, humanatopybivariategenetic correlationRhinitisselectionsingle nucleotide polymorphism

Identifiers

PMID24388013
PMCPMC4280183
OpenAlexW2081882488

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.