Evidence map›Paper›PMID 24387943›Full record

ArticleMedical image analysis2014

Multi-modal registration for correlative microscopy using image analogies.

Tian Cao, Christopher Zach, Shannon Modla, Debbie Powell, Kirk Czymmek, Marc Niethammer

Open access · greenAbstract read
In one paragraph

Article in Medical image analysis, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
5.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Unpaired Deep Cross-Modality Synthesis with Fast Training.Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support : 4th International Workshop, DLMIA 2018, and 8th International Workshop, ML-CDS 2018, held in conjunction with MICCAI 2018, Granada, Spain, S... · 2018
    Article
  5. Article
  6. Article
  7. Registration of Pathological Images.Simulation and synthesis in medical imaging : ... International Workshop, SASHIMI ..., held in conjunction with MICCAI ..., proceedings. SASHIMI (Workshop) · 2016
    Article
  8. Subject-Specific Sparse Dictionary Learning for Atlas-Based Brain MRI Segmentation.IEEE journal of biomedical and health informatics · 2015
    Article
  9. Article
  10. MR to CT Registration of Brains using Image Synthesis.Proceedings of SPIE--the International Society for Optical Engineering · 2014
    Article
  11. Subject Specific Sparse Dictionary Learning for Atlas based Brain MRI Segmentation.Machine learning in medical imaging. MLMI (Workshop) · 2014
    Article
  12. Robust multimodal dictionary learning.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Tian CaoDepartment of Computer Science, University of North Carolina at Chapel Hill, United States. Electronic address: tiancao@cs.unc.edu.
Christopher ZachMicrosoft Research, Cambridge, United Kingdom.
Shannon ModlaDelaware Biotechnology Institute, University of Delaware, United States.
Debbie PowellDelaware Biotechnology Institute, University of Delaware, United States.
Kirk CzymmekDelaware Biotechnology Institute, University of Delaware, United States; Carl Zeiss Microscopy, United States.
Marc NiethammerDepartment of Computer Science, University of North Carolina at Chapel Hill, United States; Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, United States.
Biotechnology Institute · USUniversity of North Carolina at Chapel Hill · USMicrosoft Research (United Kingdom) · GBUniversity of Delaware · US

Funding

Predictive Modeling & Optimal Control Framework for Model-Based Epidemic Response in DelawareP20GM103446 · NIGMS · UNIVERSITY OF DELAWARE · PI Anjana Narayan Bhat · 2012 to 2026
$67.2M
INTERACTIVE GRAPHICS FOR MOLECULAR STUDIES &MICROSCOPYP41EB002025 · NIBIB · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SUPERFINE, RICHARD · 2003 to 2019
$16.9M
Developmental Brain Atlas Tools and Data Applied to Humans and MacaquesR01MH091645 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI NIETHAMMER, MARC, STYNER, MARTIN ANDREAS · 2010 to 2014
$2.1M
NIBIB NIH HHS 5P41EB002025-28NIBIB NIH HHS P41 EB002025NIGMS NIH HHS P20 GM103446NIMH NIH HHS 5R01MH091645-02NIMH NIH HHS R01 MH091645
6 · The paper itself

Abstract

Correlative microscopy is a methodology combining the functionality of light microscopy with the high resolution of electron microscopy and other microscopy technologies for the same biological specimen. In this paper, we propose an image registration method for correlative microscopy, which is challenging due to the distinct appearance of biological structures when imaged with different modalities. Our method is based on image analogies and allows to transform images of a given modality into the appearance-space of another modality. Hence, the registration between two different types of microscopy images can be transformed to a mono-modality image registration. We use a sparse representation model to obtain image analogies. The method makes use of corresponding image training patches of two different imaging modalities to learn a dictionary capturing appearance relations. We test our approach on backscattered electron (BSE) scanning electron microscopy (SEM)/confocal and transmission electron microscopy (TEM)/confocal images. We perform rigid, affine, and deformable registration via B-splines and show improvements over direct registration using both mutual information and sum of squared differences similarity measures to account for differences in image appearance.

Indexed as

Microscopy, ConfocalMicroscopy, ElectronMultimodal ImagingAlgorithmsAnimalsImage EnhancementImage Processing, Computer-AssistedMiceModels, StatisticalReproducibility of ResultsSensitivity and SpecificityCorrelative microscopyImage analogiesMulti-modal registrationSparse representation models

Identifiers

PMID24387943
PMCPMC4062605
OpenAlexW2140204353

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.