Evidence map›Paper›PMID 24387306›Full record

ArticleJournal of medicinal chemistry2014

High-affinity recognition of HIV-1 frameshift-stimulating RNA alters frameshifting in vitro and interferes with HIV-1 infectivity.

Leslie O Ofori, Thomas A Hilimire, Ryan P Bennett, Nathaniel W Brown, Harold C Smith, Benjamin L Miller

Open access · bronzeAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Small Molecules Targeting Viral RNA.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
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  12. Article
  13. Article
  14. Article
  15. Article
  16. Translation Elongation and Recoding in Eukaryotes.Cold Spring Harbor perspectives in biology · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Leslie O OforiDepartments of Chemistry, ‡Biochemistry and Biophysics, and §Dermatology, University of Rochester , Rochester, New York 14642, United States.
Thomas A Hilimire
Ryan P Bennett
Nathaniel W Brown
Harold C Smith
Benjamin L Miller
OyaGen (United States) · US

Funding

Virology/Immunology CoreP30AI078498 · NIAID · UNIVERSITY OF ROCHESTER · PI DEWHURST, STEPHEN · 2008 to 2018
$14.6M
Training in Cellular, Biochemical and Molecular SciencesT32GM068411 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2005 to 2019
$3.9M
Training in HIV Replication and PathogenesisT32AI049815 · NIAID · UNIVERSITY OF ROCHESTER · PI WEDEKIND, JOSEPH E · 2001 to 2020
$3.5M
RNA Targeted Small Molecules: Connecting Binding Kinetics to Sequence SelectivityR01GM100788 · NIGMS · UNIVERSITY OF ROCHESTER · PI MILLER, BENJAMIN L · 2012 to 2015
$1.5M
Development of a High Throughput Screen for Antagonists of Vif DimerizationR21NS067671 · NINDS · OYAGEN, INC. · PI SMITH, HAROLD C · 2009 to 2011
$161k
NIAID NIH HHS P30 AI078498NIAID NIH HHS T32 AI049815NIGMS NIH HHS GM068411NIGMS NIH HHS R01 GM100788NIGMS NIH HHS R01GM100788NIGMS NIH HHS T32 GM068411NINDS NIH HHS R21 NS067671
6 · The paper itself

Abstract

The life cycle of the human immunodeficiency virus type 1 (HIV-1) has an absolute requirement for ribosomal frameshifting during protein translation in order to produce the polyprotein precursor of the viral enzymes. While an RNA stem-loop structure (the "HIV-1 Frameshift Stimulating Signal", or HIV-1 FSS) controls the frameshift efficiency and has been hypothesized as an attractive therapeutic target, developing compounds that selectively bind this RNA and interfere with HIV-1 replication has proven challenging. Building on our prior discovery of a "hit" molecule able to bind this stem-loop, we now report the development of compounds displaying high affinity for the HIV-1 FSS. These compounds are able to enhance frameshifting more than 50% in a dual-luciferase assay in human embryonic kidney cells, and they strongly inhibit the infectivity of pseudotyped HIV-1 virions.

Indexed as

Anti-HIV AgentsCell Membrane PermeabilityCell SurvivalDisulfidesFrameshifting, RibosomalHEK293 CellsHIV-1HumansLuciferases, FireflyLuciferases, RenillaNucleic Acid ConformationQuinolinesRNA, ViralStereoisomerismVirionVirus ReplicationAnti-HIV AgentsDisulfidesLuciferases, FireflyLuciferases, RenillaQuinolinesRNA, Viral

Identifiers

PMID24387306
PMCPMC3954503
OpenAlexW1963716909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.