Evidence map›Paper›PMID 24386479›Full record

ArticlePloS one2013

Comparative proteomics profile of lipid-cumulating oleaginous yeast: an iTRAQ-coupled 2-D LC-MS/MS analysis.

Jiahua Shi, Huixing Feng, Jaslyn Lee, Wei Ning Chen

Abstract readComparative Study
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. S-Nitrosylated Proteins Involved in Autophagy inLife (Basel, Switzerland) · 2023
    Article
  3. Article
  4. Antihypertensive, antidyslipidemic, and renoprotective effects ofIranian journal of basic medical sciences · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Proteome analysis of xylose metabolism inBiotechnology for biofuels · 2019
    Article
  11. Exploitation of genus Rhodosporidium for microbial lipid production.World journal of microbiology & biotechnology · 2017
    Review
  12. Article
  13. Review
  14. Article
  15. The prion protein family: a view from the placenta.Frontiers in cell and developmental biology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jiahua ShiSchool of Chemical and Biomedical Engineering, College of Engineering, Nanyang Technological University, Singapore.
Huixing FengSchool of Chemical and Biomedical Engineering, College of Engineering, Nanyang Technological University, Singapore.
Jaslyn LeeSchool of Chemical and Biomedical Engineering, College of Engineering, Nanyang Technological University, Singapore.
Wei Ning ChenSchool of Chemical and Biomedical Engineering, College of Engineering, Nanyang Technological University, Singapore.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Accumulation of intracellular lipid in oleaginous yeast cells has been studied for providing an alternative supply for energy, biofuel. Numerous studies have been conducted on increasing lipid content in oleaginous yeasts. However, few explore the mechanism of the high lipid accumulation ability of oleaginous yeast strains at the proteomics level. In this study, a time-course comparative proteomics analysis was introduced to compare the non-oleaginous yeast Saccharomyces cerevisiae, with two oleaginous yeast strains, Cryptococcus albidus and Rhodosporidium toruloides at different lipid accumulation stages. Two dimensional LC-MS/MS approach has been applied for protein profiling together with isobaric tag for relative and absolute quantitation (iTRAQ) labelling method. 132 proteins were identified when three yeast strains were all at early lipid accumulation stage; 122 and 116 proteins were found respectively within cells of three strains collected at middle and late lipid accumulation stages. Significantly up-regulation or down-regulation of proteins were experienced among comparison. Essential proteins correlated to lipid synthesis and regulation were detected. Our approach provides valuable indication and better understanding for lipid accumulation mechanism from proteomics level and would further contribute to genetic engineering of oleaginous yeasts.

Indexed as

CryptococcusLipid MetabolismProteomeProteomicsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSpecies SpecificityProteomeSaccharomyces cerevisiae Proteins

Identifiers

PMID24386479
PMCPMC3873444

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.