Evidence map›Paper›PMID 24386445›Full record

ArticlePloS one2013

The role of SwrA, DegU and P(D3) in fla/che expression in B. subtilis.

Serena Mordini, Cecilia Osera, Simone Marini, Francesco Scavone, Riccardo Bellazzi, Alessandro Galizzi, Cinzia Calvio

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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  13. Whole-genome analysis of3 Biotech · 2020
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  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Serena MordiniDepartment of Biology and Biotechnology, Università degli Studi di, Pavia, Pavia, Italy.
Cecilia OseraDepartment of Biology and Biotechnology, Università degli Studi di, Pavia, Pavia, Italy.
Simone MariniDepartment of Electrical, Computer and Biomedical Engineering, Università degli Studi di, Pavia, Pavia, Italy.
Francesco ScavoneDepartment of Biology and Biotechnology, Università degli Studi di, Pavia, Pavia, Italy.
Riccardo BellazziDepartment of Electrical, Computer and Biomedical Engineering, Università degli Studi di, Pavia, Pavia, Italy.
Alessandro GalizziDepartment of Biology and Biotechnology, Università degli Studi di, Pavia, Pavia, Italy.
Cinzia CalvioDepartment of Biology and Biotechnology, Università degli Studi di, Pavia, Pavia, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In B. subtilis swarming and robust swimming motility require the positive trigger of SwrA on fla/che operon expression. Despite having an essential and specific activity, how SwrA executes this task has remained elusive thus far. We demonstrate here that SwrA acts at the main σ(A)-dependent fla/che promoter PA(fla/che) through DegU. Electrophoretic mobility shift assays (EMSA) reveal that SwrA forms a complex with the phosphorylated form of DegU (DegU~P) at PA(fla/che) while it is unable to do so with either unphosphorylated DegU or the DegU32(Hy) mutant protein. Motility assays show that a highly phosphorylated DegU is not detrimental for flagellar motility provided that SwrA is present; however, DegU~P represses PA(fla/che) in the absence of SwrA. Overall, our data support a model in which DegU~P is a dual regulator, acting either as a repressor when alone or as a positive regulator of PA(fla/che) when combined with SwrA. Finally, we demonstrate that the σ(D)-dependent PD3(fla/che) promoter plays an important role in motility, representing a contingent feedback loop necessary to maintain basal motility when swrA is switched to the non-functional swrA(-) status.

Indexed as

Bacillus subtilisBacterial ProteinsFlagellaGene Expression Regulation, BacterialPhosphorylationSigma FactorBacterial ProteinsDegU protein, BacteriaSigma Factor

Identifiers

PMID24386445
PMCPMC3874003

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.