Evidence map›Paper›PMID 24386384›Full record

Trial reportPloS one2013

Association of STAT4 polymorphism with severe renal insufficiency in lupus nephritis.

Karin Bolin, Johanna K Sandling, Agneta Zickert, Andreas Jönsen, Christopher Sjöwall, Elisabet Svenungsson, Anders A Bengtsson, Maija-Leena Eloranta, Lars Rönnblom, Ann-Christine Syvänen and 2 more

Open access · goldAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 2 pooled it
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 2 syntheses or guidelines pooled it, 104 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. [Update on lupus nephritis].Zeitschrift fur Rheumatologie · 2024
    Review
  15. Lupus Nephritis Biomarkers: A Critical Review.International journal of molecular sciences · 2024
    Review
  16. STAT4 gene polymorphisms in human diseases.Frontiers in immunology · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Karin BolinSection of Rheumatology, Department of Medical Sciences, Uppsala University, Uppsala, Sweden.
Johanna K SandlingMolecular Medicine, Department of Medical Sciences and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Agneta ZickertRheumatology Unit, Department of Medicine, Karolinska University Hospital and Karolinska Institutet, Stockholm, Sweden.
Andreas JönsenSection of Rheumatology, Department Clinical Sciences, Lund University, Lund, Sweden.
Christopher SjöwallRheumatology/AIR, Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
Elisabet SvenungssonRheumatology Unit, Department of Medicine, Karolinska University Hospital and Karolinska Institutet, Stockholm, Sweden.
Anders A BengtssonSection of Rheumatology, Department Clinical Sciences, Lund University, Lund, Sweden.
Maija-Leena ElorantaSection of Rheumatology, Department of Medical Sciences, Uppsala University, Uppsala, Sweden.
Lars RönnblomSection of Rheumatology, Department of Medical Sciences, Uppsala University, Uppsala, Sweden ; Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Ann-Christine SyvänenMolecular Medicine, Department of Medical Sciences and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Iva GunnarssonRheumatology Unit, Department of Medicine, Karolinska University Hospital and Karolinska Institutet, Stockholm, Sweden.
Gunnel NordmarkSection of Rheumatology, Department of Medical Sciences, Uppsala University, Uppsala, Sweden.
Uppsala University · SEKarolinska Institutet · SELund University · SEKarolinska University Hospital · SELinköping University · SEScience for Life Laboratory · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lupus nephritis is a cause of significant morbidity in systemic lupus erythematosus (SLE) and its genetic background has not been completely clarified. The aim of this investigation was to analyze single nucleotide polymorphisms (SNPs) for association with lupus nephritis, its severe form proliferative nephritis and renal outcome, in two Swedish cohorts. Cohort I (n = 567 SLE cases, n = 512 controls) was previously genotyped for 5676 SNPs and cohort II (n = 145 SLE cases, n = 619 controls) was genotyped for SNPs in STAT4, IRF5, TNIP1 and BLK. Case-control and case-only association analyses for patients with lupus nephritis, proliferative nephritis and severe renal insufficiency were performed. In the case-control analysis of cohort I, four highly linked SNPs in STAT4 were associated with lupus nephritis with genome wide significance with p = 3.7 × 10(-9), OR 2.20 for the best SNP rs11889341. Strong signals of association between IRF5 and an HLA-DR3 SNP marker were also detected in the lupus nephritis case versus healthy control analysis (p <0.0001). An additional six genes showed an association with lupus nephritis with p <0.001 (PMS2, TNIP1, CARD11, ITGAM, BLK and IRAK1). In the case-only meta-analysis of the two cohorts, the STAT4 SNP rs7582694 was associated with severe renal insufficiency with p = 1.6 × 10(-3) and OR 2.22. We conclude that genetic variations in STAT4 predispose to lupus nephritis and a worse outcome with severe renal insufficiency.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAdultCase-Control StudiesFemaleGenome-Wide Association StudyHumansLupus NephritisMaleRenal Insufficiency, ChronicSeverity of Illness IndexSTAT4 Transcription FactorSTAT4 protein, humanSTAT4 Transcription Factor

Identifiers

PMID24386384
PMCPMC3873995
OpenAlexW2100336973

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.