Evidence map›Paper›PMID 24386304›Full record

ArticlePloS one2013

Agrobacterium tumefaciens-mediated transformation of the lichen fungus, Umbilicaria muehlenbergii.

Sook-Young Park, Min-Hye Jeong, Hai-Ying Wang, Jung A Kim, Nan-Hee Yu, Sungbeom Kim, Yong Hwa Cheong, Seogchan Kang, Yong-Hwan Lee, Jae-Seoun Hur

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
8.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 48 citations in OpenAlex.

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  8. Establishment ofJournal of fungi (Basel, Switzerland) · 2021
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  9. Optimization ofMycobiology · 2021
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  10. Coregulation of dimorphism and symbiosis by cyclic AMP signaling in the lichenized fungusProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  11. Article
  12. Article
  13. A comprehensive catalogue of polyketide synthase gene clusters in lichenizing fungi.Journal of industrial microbiology & biotechnology · 2018
    Review
  14. Article
  15. Article
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  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Sook-Young ParkKorean Lichen Research Institute, Sunchon National University, Sunchon, Korea ; Dept. of Agricultural Biotechnology, Fungal Bioinformatics Laboratory, Center for Fungal Genetic Resources, and Center for Fungal Pathogenesis, Seoul National University, Seoul, Korea.
Min-Hye JeongKorean Lichen Research Institute, Sunchon National University, Sunchon, Korea ; Dept. of Biology, Sunchon National University, Sunchon, Korea.
Hai-Ying WangCollege of Life Sciences, Shandong Normal University, Jinan, China.
Jung A KimKorean Lichen Research Institute, Sunchon National University, Sunchon, Korea.
Nan-Hee YuKorean Lichen Research Institute, Sunchon National University, Sunchon, Korea ; Dept. of Biology, Sunchon National University, Sunchon, Korea.
Sungbeom KimDept. of Agricultural Biotechnology, Fungal Bioinformatics Laboratory, Center for Fungal Genetic Resources, and Center for Fungal Pathogenesis, Seoul National University, Seoul, Korea.
Yong Hwa CheongKorean Lichen Research Institute, Sunchon National University, Sunchon, Korea.
Seogchan KangDept. of Plant Pathology & Environmental Microbiology, The Pennsylvania State University, University Park, Pennsylvania, United States of America.
Yong-Hwan LeeDept. of Agricultural Biotechnology, Fungal Bioinformatics Laboratory, Center for Fungal Genetic Resources, and Center for Fungal Pathogenesis, Seoul National University, Seoul, Korea.
Jae-Seoun HurKorean Lichen Research Institute, Sunchon National University, Sunchon, Korea.
Sunchon National University · KRSeoul National University · KRPennsylvania State University · USShandong Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transformation-mediated mutagenesis in both targeted and random manners has been widely applied to decipher gene function in diverse fungi. However, a transformation system has not yet been established for lichen fungi, severely limiting our ability to study their biology and mechanism underpinning symbiosis via gene manipulation. Here, we report the first successful transformation of the lichen fungus, Umbilicaria muehlenbergii, via the use of Agrobacterium tumefaciens. We generated a total of 918 transformants employing a binary vector that carries the hygromycin B phosphotransferase gene as a selection marker and the enhanced green fluorescent protein gene for labeling transformants. Randomly selected transformants appeared mitotically stable, based on their maintenance of hygromycin B resistance after five generations of growth without selection. Genomic Southern blot showed that 88% of 784 transformants contained a single T-DNA insert in their genome. A number of putative mutants affected in colony color, size, and/or morphology were found among these transformants, supporting the utility of Agrobacterium tumefaciens-mediated transformation (ATMT) for random insertional mutagenesis of U. muehlenbergii. This ATMT approach potentially offers a systematic gene functional study with genome sequences of U. muehlenbergii that is currently underway.

Indexed as

Transformation, GeneticAgrobacterium tumefaciensAscomycotaDNA, BacterialGenes, FungalGenetic EngineeringGreen Fluorescent ProteinsMutationPhenotypeDNA, BacterialGreen Fluorescent ProteinsT-DNA

Identifiers

PMID24386304
PMCPMC3875497
OpenAlexW2071071896

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.