Evidence map›Paper›PMID 24385486›Full record

ArticleThe Journal of cell biology2013

An internal ligand-bound, metastable state of a leukocyte integrin, αXβ2.

Mehmet Sen, Koichi Yuki, Timothy A Springer

Abstract read
In one paragraph

Article in The Journal of cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. αStructure (London, England : 1993) · 2024
    Article
  8. Article
  9. Integrin CD11c regulates B cell homeostasis.Frontiers in immunology · 2024
    Article
  10. Family-wide analysis of integrin structures predicted by AlphaFold2.bioRxiv : the preprint server for biology · 2023
    Article
  11. Article
  12. Review
  13. Targeting integrin pathways: mechanisms and advances in therapy.Signal transduction and targeted therapy · 2023
    Review
  14. Structural biology of complement receptors.Frontiers in immunology · 2023
    Review
  15. Family-wide analysis of integrin structures predicted by AlphaFold2.Computational and structural biotechnology journal · 2023
    Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Mehmet SenProgram in Cellular and Molecular Medicine, 2 Department of Medicine, 3 Department of Anethesiology, 4 Children's Hospital Boston, and 5 Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115.
Koichi Yuki
Timothy A Springer

Funding

Leukocyte Adhesion Receptors Mac-1 and P150,95R01AI072765 · NIAID · IMMUNE DISEASE INSTITUTE, INC. · PI SPRINGER, TIMOTHY A · 2007 to 2017
$5.1M
The anti-inflammatory effects of CeO2 nanoparticles in SLER15AI072756 · NIAID · VIRGINIA COLLEGE OF OSTEOPATHIC MEDICINE · PI REILLY, CHRISTOPHER MICHAEL · 2008 to 2008
$254k
NIAID NIH HHS AI072756NIAID NIH HHS R01 AI072765NIAID NIH HHS R15 AI072756
6 · The paper itself

Abstract

How is massive conformational change in integrins achieved on a rapid timescale? We report crystal structures of a metastable, putative transition state of integrin αXβ2. The αXβ2 ectodomain is bent; however, a lattice contact stabilizes its ligand-binding αI domain in a high affinity, open conformation. Much of the αI α7 helix unwinds, loses contact with the αI domain, and reshapes to form an internal ligand that binds to the interface between the β propeller and βI domains. Lift-off of the αI domain above this platform enables a range of extensional and rotational motions without precedent in allosteric machines. Movements of secondary structure elements in the β2 βI domain occur in an order different than in β3 integrins, showing that integrin β subunits can be specialized to assume different intermediate states between closed and open. Mutations demonstrate that the structure trapped here is metastable and can enable rapid equilibration between bent and extended-open integrin conformations and up-regulation of leukocyte adhesiveness.

Indexed as

Amino Acid SequenceAnimalsBinding SitesComplement C3bCrystallography, X-RayEpitopesErythrocytesHEK293 CellsHumansIntegrin alphaXbeta2LeukocytesLigandsModels, BiologicalModels, MolecularMolecular Sequence DataMutationComplement C3bEpitopesIntegrin alphaXbeta2Ligands

Identifiers

PMID24385486
PMCPMC3840939

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.