ArticlePlant cell reports2014
Global gene expression responses to waterlogging in leaves of rape seedlings.
Article in Plant cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.
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Who cites it
27 citing papers in PubMed, 1 synthesis or guideline pooled it, 77 citations in OpenAlex.
- Meta-analysis of major QTL for abiotic stress tolerance in barley and implications for barley breeding.Planta · 2017Pooled it
- Distinct physiological and transcriptomic responses between tolerant and susceptible rapeseed (Brassica napus) germplasm to flooding stress.BMC genomic data · 2026Article
- Transcriptome and Small-RNA Sequencing Reveals the Response Mechanism ofPlants (Basel, Switzerland) · 2025Article
- A review of soil waterlogging impacts, mechanisms, and adaptive strategies.Frontiers in plant science · 2025Review
- The roles of cell wall polysaccharides in response to waterlogging stress in Brassica napus L. root.BMC biology · 2024Article
- Comparative Morpho-Physiological, Biochemical, and Gene Expressional Analyses Uncover Mechanisms of Waterlogging Tolerance in Two Soybean Introgression Lines.Plants (Basel, Switzerland) · 2024Article
- Comparative transcriptomic analysis of germinating rice seedlings to individual and combined anaerobic and cold stress.BMC genomics · 2023Article
- Tissue-Specific Transcriptome and Metabolome Analysis Reveals the Response Mechanism ofInternational journal of molecular sciences · 2023Article
- Physiological and comparative transcriptome analysis of the response and adaptation mechanism of the photosynthetic function of mulberry (Plant signaling & behavior · 2022Article
- Physiological and comparative transcriptome analyses reveal the mechanisms underlying waterlogging tolerance in a rapeseed anthocyanin-more mutant.Biotechnology for biofuels and bioproducts · 2022Article
- Transcriptomic profiling suggests candidate molecular responses to waterlogging in cassava.PloS one · 2022Article
- Transcriptional Response of TwoFrontiers in plant science · 2022Article
- PacBio full-length sequencing integrated with RNA-seq reveals the molecular mechanism of waterlogging and its recovery inFrontiers in plant science · 2022Article
- Transcriptome Analysis Reveals Genes of Flooding-Tolerant and Flooding-Sensitive Rapeseeds Differentially Respond to Flooding at the Germination Stage.Plants (Basel, Switzerland) · 2021Article
- Effects of supplemental nitrogen application on physiological characteristics, dry matter and nitrogen accumulation of winter rapeseed (Brassica napus L.) under waterlogging stress.Scientific reports · 2020Article
- Transcriptome analysis on responses of orchardgrass (Dactylis glomerata L.) leaves to a short term flooding.Hereditas · 2020Article
- Genome-Wide Analysis of Gene Expression Provides New Insights into Waterlogging Responses in Barley (Plants (Basel, Switzerland) · 2020Article
- Mechanisms of Waterlogging Tolerance in Plants: Research Progress and Prospects.Frontiers in plant science · 2020Review
- Article
- Proteomic Analysis of Rapeseed Root Response to Waterlogging Stress.Plants (Basel, Switzerland) · 2018Article
Corrections and comments
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Soil waterlogging is a serious constraint to crop production. We investigated the physiological responses of rape (Brassica napus L.) seedlings to waterlogging stress and analyzed global gene transcription responses in the aerial leaves of waterlogged rape seedlings. Seedlings of 'Tammi' and 'Youngsan' cultivars were subjected to waterlogging for 3 and 6 days and recovery for 5 days. Waterlogging stress caused a significant decrease in leaf chlorophyll content and premature senescence of the leaves. Maximal quantum efficiency of PSII (F(v)/F(m)) decreased in the waterlogged seedlings compared with the control plants. To evaluate whether the observed physiological changes in the leaves are associated with the differential regulation of gene expression in response to waterlogging stress, we analyzed the global transcriptional profile of leaves of 'Tammi' seedlings that were exposed to waterlogging for a short period (36 and 72 h). SolexaQA RNA-seq analysis revealed that a total of 4,484 contigs (8.5 %) of all contigs assayed (52,747) showed a twofold change in expression after 36 h of the start of waterlogging and 9,659 contigs (18.3 %) showed a twofold change after 72 h. Major genes involved in leaf photosynthesis, including light reactions and carbon-fixing reactions, were downregulated, while a number of genes involved in the scavenging of reactive oxygen species, degradation (proteins, starch, and lipids), premature senescence, and abiotic stress tolerance were upregulated. Transcriptome analysis data suggested that the aerial leaves of waterlogged rape seedlings respond to hypoxia by regulating the expression of diverse genes in the leaves.
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