Evidence map›Paper›PMID 24384388›Full record

ArticleDevelopmental biology2014

Oral-aboral axis specification in the sea urchin embryo, IV: hypoxia radializes embryos by preventing the initial spatialization of nodal activity.

James A Coffman, Abigail Wessels, Carolyn DeSchiffart, Katarina Rydlizky

Abstract read
In one paragraph

Article in Developmental biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  4. Article
  5. Development of a larval nervous system in the sea urchin.Current topics in developmental biology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

James A CoffmanMount Desert Island Biological Laboratory, Salisbury Cove, Maine 04672, USA. Electronic address: jcoffman@mdibl.org.
Abigail WesselsMount Desert Island Biological Laboratory, Salisbury Cove, Maine 04672, USA.
Carolyn DeSchiffartMount Desert Island Biological Laboratory, Salisbury Cove, Maine 04672, USA.
Katarina RydlizkyMount Desert Island Biological Laboratory, Salisbury Cove, Maine 04672, USA.
Mount Desert Island Biological Laboratory · US

Funding

The Maine Biomedical Research Network (INBRE)P20GM103423 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI Dustin Lynn Updike · 2012 to 2026
$60.0M
Understanding the role of thyroid hormone signaling during axolotl limb regenerationP20GM104318 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI DRUMMOND, IAIN A. · 2013 to 2023
$23.0M
MDIBL STEER: Pathways of Chemical Action in Human DiseaseR25ES016254 · NIEHS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI STANTON, BRUCE A. · 2008 to 2012
$223k
NIEHS NIH HHS R25 ES016254NIEHS NIH HHS R25ES016254NIGMS NIH HHS P20GM0103423NIGMS NIH HHS P20 GM103423NIGMS NIH HHS P20 GM104318
6 · The paper itself

Abstract

The oral-aboral axis of the sea urchin embryo is specified conditionally via a regulated feedback circuit involving the signaling gene nodal and its antagonist lefty. In normal development nodal activity becomes localized to the prospective oral side of the blastula stage embryo, a process that requires lefty. In embryos of Strongylocentrotus purpuratus, a redox gradient established by asymmetrically distributed mitochondria provides an initial spatial input that positions the localized domain of nodal expression. This expression is perturbed by hypoxia, leading to development of radialized embryos lacking an oral-aboral axis. Here we show that this radialization is not caused by a failure to express nodal, but rather by a failure to localize nodal activity to one side of the embryo. This occurs even when embryos are removed from hypoxia at late cleavage stage when nodal is first expressed, indicating that the effect involves the initiation phase of nodal activity, rather than its positive feedback-driven amplification and maintenance. Quantitative fluorescence microscopy of MitoTracker Orange-labeled embryos expressing nodal-GFP reporter gene revealed that hypoxia abolishes the spatial correlation between mitochondrial distribution and nodal expression, suggesting that hypoxia eliminates the initial spatial bias in nodal activity normally established by the redox gradient. We propose that absent this bias, the initiation phase of nodal expression is spatially uniform, such that the ensuing Nodal-mediated community effect is not localized, and hence refractory to Lefty-mediated enforcement of localization.

Indexed as

AnimalsBody PatterningDNA PrimersEmbryo, NonmammalianGene Expression Regulation, DevelopmentalGene Knockdown TechniquesIn Situ HybridizationMicroscopy, FluorescenceNodal ProteinOxygenReal-Time Polymerase Chain ReactionStrongylocentrotus purpuratusXanthenesDNA Primersmitotracker orangeNodal ProteinOxygenXanthenesAxisEmbryoHypoxiaMitochondriaNodalPolarity

Identifiers

PMID24384388
PMCPMC3929957
OpenAlexW2028327476

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.