Evidence map›Paper›PMID 24382465›Full record

ArticleMetallomics : integrated biometal science2014

Enterococcus faecalis reconfigures its transcriptional regulatory network activation at different copper levels.

Mauricio Latorre, Jessica Galloway-Peña, Jung Hyeob Roh, Marko Budinich, Angélica Reyes-Jara, Barbara E Murray, Alejandro Maass, Mauricio González

Open access · greenAbstract read
In one paragraph

Article in Metallomics : integrated biometal science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Integration of Biological Networks forFrontiers in molecular biosciences · 2019
    Article
  9. Article
  10. Proteogenomic Analysis ofFrontiers in microbiology · 2018
    Article
  11. Article
  12. Article
  13. Stress Physiology of Lactic Acid Bacteria.Microbiology and molecular biology reviews : MMBR · 2016
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Mauricio LatorreLaboratorio de Bioinformática y Expresión Génica, INTA, Universidad de Chile, El Líbano 5524, Santiago 11, Chile. mlatorre@uchile.inta.cl, mgonzale@uchile.inta.cl.
Jessica Galloway-Peña
Jung Hyeob Roh
Marko Budinich
Angélica Reyes-Jara
Barbara E Murray
Alejandro Maass
Mauricio González
University of Chile · CLThe University of Texas at Austin · USCenter for Mathematical Modeling

Funding

Molecular Basis of Infectious Diseases Training GrantT32AI055449 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LORENZ, MICHAEL C · 2005 to 2025
$2.6M
Importance of adhesin-like proteins of Enteroccocus faeciumR01AI067861 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MURRAY, BARBARA E · 2006 to 2010
$1.8M
Defining the Role of WxL Proteins in Enterococcus faeciumF31AI092891 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI GALLOWAY-PENA, JESSICA RHEA · 2011 to 2013
$63k
NIAID NIH HHS F31 AI092891NIAID NIH HHS R01 AI067861NIAID NIH HHS T32 AI055449
6 · The paper itself

Abstract

A global transcriptional regulatory network was generated in the pathogenic bacterium Enterococcus faecalis in order to understand how this organism can activate and coordinate its expression at different copper concentrations. The topological evaluation of the network showed common patterns described in other organisms. Integrating microarray experiments allowed the identification of two sub-networks activated at low (0.05 mM CuSO4) and high (0.5 mM CuSO4) concentrations of copper. The analysis indicates the presence of specific functionally activated modules induced by copper levels, highlighting the regulons LysR and ArgR as global regulators and CopY, Fur and LexA as local regulators. Taking advantage of the fact that E. faecalis presented a homeostatic module, we produced an in vivo intervention by removing this system from the cell without affecting the connectivity of the global transcriptional network. This strategy led us to find that this bacterium can reconfigure its gene expression to maintain cellular homeostasis, activating new modules principally related to glucose metabolism and transcriptional processes. Finally, these results position E. faecalis as the most complete and controllable systemic model organism for copper homeostasis available to date.

Indexed as

Gene Expression Regulation, BacterialGene Regulatory NetworksCopperEnterococcus faecalisGram-Positive Bacterial InfectionsHumansCopper

Identifiers

PMID24382465
PMCPMC4131723
OpenAlexW1968367842

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.