Evidence map›Paper›PMID 24382019›Full record

ArticleMolecular plant pathology2014

Genomic evaluation of oxalate-degrading transgenic soybean in response to Sclerotinia sclerotiorum infection.

Bernarda Calla, Laureen Blahut-Beatty, Lisa Koziol, Yunfang Zhang, David J Neece, Doris Carbajulca, Alexandre Garcia, Daina H Simmonds, Steven J Clough

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant pathology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Bernarda CallaUniversity of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Laureen Blahut-Beatty
Lisa Koziol
Yunfang Zhang
David J Neece
Doris Carbajulca
Alexandre Garcia
Daina H Simmonds
Steven J Clough
Agriculture and Agri-Food Canada · CAUniversity of Illinois Urbana-Champaign · USAgricultural Research Service · USUrbana University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oxalate oxidases (OxO) catalyse the degradation of oxalic acid (OA). Highly resistant transgenic soybean carrying an OxO gene and its susceptible parent soybean line, AC Colibri, were tested for genome-wide gene expression in response to the necrotrophic, OA-producing pathogen Sclerotinia sclerotiorum using soybean cDNA microarrays. The genes with changed expression at statistically significant levels (overall F-test P-value cut-off of 0.0001) were classified into functional categories and pathways, and were analysed to evaluate the differences in transcriptome profiles. Although many genes and pathways were found to be similarly activated or repressed in both genotypes after inoculation with S. sclerotiorum, the OxO genotype displayed a measurably faster induction of basal defence responses, as observed by the differential changes in defence-related and secondary metabolite genes compared with its susceptible parent AC Colibri. In addition, the experiment presented provides data on several other transcripts that support the hypothesis that S. sclerotiorum at least partially elicits the hypersensitive response, induces lignin synthesis (cinnamoyl CoA reductase) and elicits as yet unstudied signalling pathways (G-protein-coupled receptor and related). Of the nine genes showing the most extreme opposite directions of expression between genotypes, eight were related to photosynthesis and/or oxidation, highlighting the importance of redox in the control of this pathogen.

Indexed as

AscomycotaBase SequenceDisease ResistanceDNA, PlantGene Expression Regulation, PlantGenome, PlantGlycine maxGTP-Binding ProteinsLigninMolecular Sequence DataOxalatesOxidoreductasesPeroxidasesPlant DiseasesPlant ProteinsPlants, Genetically ModifiedDNA, PlantGTP-Binding ProteinsLigninoxalate oxidaseOxalatesOxidoreductasesPeroxidasesPlant Proteinsdefencemicroarraynecrotrophphotosynthesistranscriptomicswhite mould

Identifiers

PMID24382019
PMCPMC6638623
OpenAlexW2097633856

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.