Evidence map›Paper›PMID 24381304›Full record

ArticleHuman molecular genetics2014

Disruption of the ASTN2/TRIM32 locus at 9q33.1 is a risk factor in males for autism spectrum disorders, ADHD and other neurodevelopmental phenotypes.

Anath C Lionel, Kristiina Tammimies, Andrea K Vaags, Jill A Rosenfeld, Joo Wook Ahn, Daniele Merico, Abdul Noor, Cassandra K Runke, Vamsee K Pillalamarri, Melissa T Carter and 74 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed, 6 pooled it
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 6 syntheses or guidelines pooled it, 172 citations in OpenAlex.

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  18. Mice lackingProceedings of the National Academy of Sciences of the United States of America · 2024
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34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

84 authors at 20 institutions in 9 countries.

Anath C LionelThe Centre for Applied Genomics.
Kristiina Tammimies
Andrea K Vaags
Jill A Rosenfeld
Joo Wook Ahn
Daniele Merico
Abdul Noor
Cassandra K Runke
Vamsee K Pillalamarri
Melissa T Carter
Matthew J Gazzellone
Bhooma Thiruvahindrapuram
Christina Fagerberg
Lone W Laulund
Giovanna Pellecchia
Sylvia Lamoureux
Charu Deshpande
Jill Clayton-Smith
Ann C White
Susan Leather
John Trounce
H Melanie Bedford
Eli Hatchwell
Peggy S Eis
Ryan K C Yuen
Susan Walker
Mohammed Uddin
Michael T Geraghty
Sarah M Nikkel
Eva M Tomiak
Bridget A Fernandez
Noam Soreni
Jennifer Crosbie
Paul D Arnold
Russell J Schachar
Wendy Roberts
Andrew D Paterson
Joyce So
Peter Szatmari
Christina Chrysler
Marc Woodbury-Smith
R Brian Lowry
Lonnie Zwaigenbaum
Divya Mandyam
John Wei
Jeffrey R Macdonald
Jennifer L Howe
Thomas Nalpathamkalam
Zhuozhi Wang
Daniel Tolson
David S Cobb
Timothy M Wilks
Mark J Sorensen
Patricia I Bader
Yu An
Bai-Lin Wu
Sebastiano Antonino Musumeci
Corrado Romano
Diana Postorivo
Anna M Nardone
Matteo Della Monica
Gioacchino Scarano
Leonardo Zoccante
Francesca Novara
Orsetta Zuffardi
Roberto Ciccone
Vincenzo Antona
Massimo Carella
Leopoldo Zelante
Pietro Cavalli
Carlo Poggiani
Ugo Cavallari
Bob Argiropoulos
Judy Chernos
Charlotte Brasch-Andersen
Marsha Speevak
Marco Fichera
Caroline Mackie Ogilvie
Yiping Shen
Jennelle C Hodge
Michael E Talkowski
Dimitri J Stavropoulos
Christian R Marshall
Stephen W Scherer
Institut thématique Génétique, génomique et bioinformatique · FRUniversity of Toronto · CAAlberta Health Services · CACasa Sollievo della Sofferenza · ITGuy's and St Thomas' NHS Foundation Trust · GBHospital for Sick Children · CAMadigan Army Medical Center · USUniversity of Pavia · ITAzienda Ospedaliera G.Rummo · ITBoston Children's Hospital · USCentre for Addiction and Mental Health · CAHarvard University · USMayo Clinic · USMcMaster University · CAOdense University Hospital · DKPediatrics and Genetics · USUniversity of Ottawa · CAUniversity of Rome Tor Vergata · ITAlberta Children's Hospital · CABrighton General Hospital · GB

Funding

Statistical MethodsP01CA087969 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI TWOROGER, SHELLEY S · 2000 to 2019
$77.8M
Validity of Diet and Activity Measures in WomenP01CA055075 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI RIMM, ERIC B · 1991 to 2009
$41.8M
A Center for GEI Association StudiesU01HG004424 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY · 2007 to 2010
$21.4M
The Collaborative Genetic Study of Nicotine DependenceP01CA089392 · NCI · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2001 to 2012
$17.3M
RELAPSE: LINKING SCIENCE AND PRACTICEP50CA084724 · NCI · UNIVERSITY OF WISCONSIN MADISON · PI FIORE, MICHAEL C · 1999 to 2003
$8.9M
Tobacco Dependence: Treatment and OutcomesP50DA019706 · NIDA · UNIVERSITY OF WISCONSIN-MADISON · PI JACKSON, THOMAS C · 2004 to 2008
$8.6M
BIOCHEMICAL AND GENETIC MARKERS OF TYPE 2 DIABETES RISKR01DK058845 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI HU, FRANK B · 2001 to 2013
$7.8M
Genome Wide Association Coordinating CenterU01HG004446 · NHGRI · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2007 to 2011
$6.6M
Genes and Environment Initiatives in Type 2 DiabetesU01HG004399 · NHGRI · HARVARD SCHOOL OF PUBLIC HEALTH · PI HU, FRANK B · 2007 to 2008
$1.2M
Complex Genetic Architecture of Chromosomal Aberrations in AutismR00MH095867 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI TALKOWSKI, MICHAEL E · 2014 to 2016
$747k
Complex Genetic Architecture of Chromosomal Aberrations in AutismK99MH095867 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI TALKOWSKI, MICHAEL E · 2012 to 2013
$186k
CIHRNCI NIH HHS CA55075NCI NIH HHS CA87969NCI NIH HHS P01 CA055075NCI NIH HHS P01 CA087969NCI NIH HHS P01 CA089392NCI NIH HHS P50 CA084724NHGRI NIH HHS U01 HG004399NHGRI NIH HHS U01HG004399NHGRI NIH HHS U01 HG004424NHGRI NIH HHS U01HG004424NHGRI NIH HHS U01 HG004446NHGRI NIH HHS U01HG004446NIDA NIH HHS P50 DA019706NIDDK NIH HHS DK58845NIDDK NIH HHS R01 DK058845NIMH NIH HHS MH095867
6 · The paper itself

Abstract

Rare copy number variants (CNVs) disrupting ASTN2 or both ASTN2 and TRIM32 have been reported at 9q33.1 by genome-wide studies in a few individuals with neurodevelopmental disorders (NDDs). The vertebrate-specific astrotactins, ASTN2 and its paralog ASTN1, have key roles in glial-guided neuronal migration during brain development. To determine the prevalence of astrotactin mutations and delineate their associated phenotypic spectrum, we screened ASTN2/TRIM32 and ASTN1 (1q25.2) for exonic CNVs in clinical microarray data from 89 985 individuals across 10 sites, including 64 114 NDD subjects. In this clinical dataset, we identified 46 deletions and 12 duplications affecting ASTN2. Deletions of ASTN1 were much rarer. Deletions near the 3' terminus of ASTN2, which would disrupt all transcript isoforms (a subset of these deletions also included TRIM32), were significantly enriched in the NDD subjects (P = 0.002) compared with 44 085 population-based controls. Frequent phenotypes observed in individuals with such deletions include autism spectrum disorder (ASD), attention deficit hyperactivity disorder (ADHD), speech delay, anxiety and obsessive compulsive disorder (OCD). The 3'-terminal ASTN2 deletions were significantly enriched compared with controls in males with NDDs, but not in females. Upon quantifying ASTN2 human brain RNA, we observed shorter isoforms expressed from an alternative transcription start site of recent evolutionary origin near the 3' end. Spatiotemporal expression profiling in the human brain revealed consistently high ASTN1 expression while ASTN2 expression peaked in the early embryonic neocortex and postnatal cerebellar cortex. Our findings shed new light on the role of the astrotactins in psychopathology and their interplay in human neurodevelopment.

Indexed as

AdolescentAdultAttention Deficit Disorder with HyperactivityCase-Control StudiesChildChild Development Disorders, PervasiveChild, PreschoolChromosomes, Human, Pair 9DNA Copy Number VariationsExonsFemaleGene ExpressionGenetic Association StudiesGenetic Predisposition to DiseaseGlycoproteinsHumansASTN1 protein, humanASTN2 protein, humanGlycoproteinsNerve Tissue ProteinsProtein IsoformsReceptors, Cell SurfaceTranscription FactorsTRIM32 protein, humanTripartite Motif ProteinsUbiquitin-Protein Ligases

Identifiers

PMID24381304
PMCPMC3990173
OpenAlexW2155294359

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.