Evidence map›Paper›PMID 24379388›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence.

Jin Chen, Ravindra V Dalal, Alexey N Petrov, Albert Tsai, Seán E O'Leary, Karen Chapin, Janice Cheng, Mark Ewan, Pei-Lin Hsiung, Paul Lundquist and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 157 citations in OpenAlex.

  1. Remodeling of mRNA by eIF4F in human translation initiation.bioRxiv : the preprint server for biology · 2026
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  2. Review
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  9. eIF1 and eIF5 dynamically control translation start site fidelity.Nature structural & molecular biology · 2025
    Article
  10. Review
  11. Dynamics and Regulation of mRNA Cap Recognition by Human eIF4F.bioRxiv : the preprint server for biology · 2025
    Article
  12. Article
  13. Review
  14. Review
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  18. NMolecular cell · 2024
    Article
  19. Review
  20. Partial spontaneous intersubunit rotations in pretranslocation ribosomes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Jin ChenDepartment of Applied Physics, Stanford University, Stanford, CA 94305.
Ravindra V Dalal
Alexey N Petrov
Albert Tsai
Seán E O'Leary
Karen Chapin
Janice Cheng
Mark Ewan
Pei-Lin Hsiung
Paul Lundquist
Stephen W Turner
David R Hsu
Joseph D Puglisi
Pacific Biosciences (United States) · USStanford University · US

Funding

STRUCTURAL BASIS FOR RIBOSOME FUNCTIONSR01GM051266 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PUGLISI, JOSEPH D · 1995 to 2021
$7.7M
Single molecule translational profilingR01GM099687 · NIGMS · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 2011 to 2015
$4.3M
NIGMS NIH HHS GM099687NIGMS NIH HHS GM51266NIGMS NIH HHS R01 GM051266NIGMS NIH HHS R01 GM099687
6 · The paper itself

Abstract

Zero-mode waveguides provide a powerful technology for studying single-molecule real-time dynamics of biological systems at physiological ligand concentrations. We customized a commercial zero-mode waveguide-based DNA sequencer for use as a versatile instrument for single-molecule fluorescence detection and showed that the system provides long fluorophore lifetimes with good signal to noise and low spectral cross-talk. We then used a ribosomal translation assay to show real-time fluidic delivery during data acquisition, showing it is possible to follow the conformation and composition of thousands of single biomolecules simultaneously through four spectral channels. This instrument allows high-throughput multiplexed dynamics of single-molecule biological processes over long timescales. The instrumentation presented here has broad applications to single-molecule studies of biological systems and is easily accessible to the biophysical community.

Indexed as

FluorescenceSoftwareAlgorithmsBiophysicsComputer SystemsHigh-Throughput Screening AssaysMonitoring, Physiologic

Identifiers

PMID24379388
PMCPMC3896158
OpenAlexW1977865284

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.