Evidence map›Paper›PMID 24379371›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Hydrophobic plug functions as a gate in voltage-gated proton channels.

Adam Chamberlin, Feng Qiu, Santiago Rebolledo, Yibo Wang, Sergei Y Noskov, H Peter Larsson

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 86 citations in OpenAlex.

  1. Review
  2. Quantitative insights into the mechanism of proton conduction and selectivity for the human voltage-gated proton channel Hv1.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Transcendent Aspects of Proton Channels.Annual review of physiology · 2024
    Review
  4. Review
  5. Trapping Charge Mechanism in Hv1 Channels (International journal of molecular sciences · 2023
    Article
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  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Adam ChamberlinCentre for Molecular Simulation and Department of Biological Sciences, University of Calgary, Calgary, AB, Canada T2N 2N4.
Feng Qiu
Santiago Rebolledo
Yibo Wang
Sergei Y Noskov
H Peter Larsson
University of Calgary · CAUniversity of Miami · US

Funding

Molecular mechanisms of voltage-gated proton channelsR01HL095920 · NHLBI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LARSSON, HANS PETER · 2010 to 2013
$1.5M
CIHR MOP-186232NHLBI NIH HHS R01 HL095920NHLBI NIH HHS R01-HL095920
6 · The paper itself

Abstract

Voltage-gated proton (Hv1) channels play important roles in the respiratory burst, in pH regulation, in spermatozoa, in apoptosis, and in cancer metastasis. Unlike other voltage-gated cation channels, the Hv1 channel lacks a centrally located pore formed by the assembly of subunits. Instead, the proton permeation pathway in the Hv1 channel is within the voltage-sensing domain of each subunit. The gating mechanism of this pathway is still unclear. Mutagenic and fluorescence studies suggest that the fourth transmembrane (TM) segment (S4) functions as a voltage sensor and that there is an outward movement of S4 during channel activation. Using thermodynamic mutant cycle analysis, we find that the conserved positively charged residues in S4 are stabilized by countercharges in the other TM segments both in the closed and open states. We constructed models of both the closed and open states of Hv1 channels that are consistent with the mutant cycle analysis. These structural models suggest that electrostatic interactions between TM segments in the closed state pull hydrophobic residues together to form a hydrophobic plug in the center of the voltage-sensing domain. Outward S4 movement during channel activation induces conformational changes that remove this hydrophobic plug and instead insert protonatable residues in the center of the channel that, together with water molecules, can form a hydrogen bond chain across the channel for proton permeation. This suggests that salt bridge networks and the hydrophobic plug function as the gate in Hv1 channels and that outward movement of S4 leads to the opening of this gate.

Indexed as

Models, MolecularProtein ConformationBase SequenceHydrophobic and Hydrophilic InteractionsIon Channel GatingIon ChannelsMolecular Dynamics SimulationMolecular Sequence DataMutagenesis, Site-DirectedPatch-Clamp TechniquesProtein BindingSequence Analysis, DNAThermodynamicsHVCN1 protein, humanIon Channelsblockermolecular dynamicsmutagenesis cyclevoltage gatingVSOP

Identifiers

PMID24379371
PMCPMC3896152
OpenAlexW1985718433

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.