Evidence map›Paper›PMID 24378760›Full record

ArticleOncology reports2014

High throughput RNAi screening identifies ID1 as a synthetic sick/lethal gene interacting with the common TP53 mutation R175H.

Hiroo Imai, Shunsuke Kato, Yasuhiro Sakamoto, Yuichi Kakudo, Hideki Shimodaira, Chikashi Ishioka

Abstract read
In one paragraph

Article in Oncology reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Expression, function, and regulation of the embryonic transcription factor TBX1 in parathyroid tumors.Laboratory investigation; a journal of technical methods and pathology · 2017
    Article
  3. [Relationship between ID1 and EGFR-TKI Resistance 
in Non-small Cell Lung Cancer].Zhongguo fei ai za zhi = Chinese journal of lung cancer · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hiroo ImaiDepartment of Clinical Oncology, IDAC, Tohoku University, Sendai, Miyagi 980-8575, Japan.
Shunsuke KatoDepartment of Clinical Oncology, IDAC, Tohoku University, Sendai, Miyagi 980-8575, Japan.
Yasuhiro SakamotoDepartment of Clinical Oncology, IDAC, Tohoku University, Sendai, Miyagi 980-8575, Japan.
Yuichi KakudoDepartment of Clinical Oncology, IDAC, Tohoku University, Sendai, Miyagi 980-8575, Japan.
Hideki ShimodairaDepartment of Clinical Oncology, IDAC, Tohoku University, Sendai, Miyagi 980-8575, Japan.
Chikashi IshiokaDepartment of Clinical Oncology, IDAC, Tohoku University, Sendai, Miyagi 980-8575, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The TP53 mutation (R175H) is one of the most common mutations in human cancer. It is a highly attractive strategy for cancer therapy to find the genes that lead the R175H-expressing cancer cells. The aim of this study was to identify the synthetic sick/lethal gene interacting with R175H. Using lentiviral bar-coded comprehensive shRNA library and a tetracycline-inducible R175H expressed in the SF126 human glioblastoma cell line (SF126-tet-R175H), we conducted high-throughput screening to identify the candidate genes that induce synthetic sickness/lethality in R175H-expressing cells. We identified 906 candidate gene suppressions that may lead to accelerated cell growth inhibition in the presence of R175H. Inhibitor of differentiation 1 (ID1) was one of the candidate genes, and its suppression by siRNA resulted in the acceleration of growth inhibition in cell lines both transiently and endogenously expressing R175H but not in TP53-null cell lines or other common p53 mutants (such as R273H). Flow cytometry analysis showed that ID1 suppression resulted in G1 arrest, and the arrest was accelerated by the expression of R175H. ID1 is a synthetic sick/lethal gene that interacts with R175H and is considered to be a novel molecular target for cancer therapy in R175H-expressing cells.

Indexed as

Cell ProliferationEpistasis, GeneticG1 Phase Cell Cycle CheckpointsGene Knockdown TechniquesGenes, LethalHCT116 CellsHumansInhibitor of Differentiation Protein 1Mutation, MissenseRNA InterferenceRNA, Small InterferingTumor Suppressor Protein p53ID1 protein, humanInhibitor of Differentiation Protein 1RNA, Small InterferingTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID24378760
PMCPMC3926671

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.