ArticleEmerging infectious diseases2014
Genomic epidemiology of Vibrio cholerae O1 associated with floods, Pakistan, 2010.
Article in Emerging infectious diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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22 citing papers in PubMed.
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- Genomic insights into the 2022-2023Vibrio cholerae outbreak in Malawi.Nature communications · 2024Article
- Genomic epidemiology of Vibrio cholerae during a mass vaccination campaign of displaced communities in Bangladesh.Nature communications · 2023Article
- Climate Change and Nutrition: Implications for the Eastern Mediterranean Region.International journal of environmental research and public health · 2022Review
- Molecular characterization ofJournal of medical microbiology · 2021Article
- Disaster displacement and zoonotic disease dynamics: The impact of structural and chronic drivers in Sindh, Pakistan.PLOS global public health · 2021Article
- Genome Sequence of a Pathogenic Vibrio cholerae O1 El Tor Strain Defective for the EntireMicrobiology resource announcements · 2020Article
- Preliminary Work Towards Finding Proteins as Potential Vaccine Candidates forMedicina (Kaunas, Lithuania) · 2019Article
- Epidemiological and molecular forensics of cholera recurrence in Haiti.Scientific reports · 2019Article
- Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae.Journal of clinical microbiology · 2018Article
- Comparative analyses of CTX prophage region of Vibrio cholerae seventh pandemic wave 1 strains isolated in Asia.Microbiology and immunology · 2018Article
- Mutation Landscape of Base Substitutions, Duplications, and Deletions in the Representative Current Cholera Pandemic Strain.Genome biology and evolution · 2018Article
- Defining endemic cholera at three levels of spatiotemporal resolution within Bangladesh.Nature genetics · 2018Article
- Vibrio cholerae accessory colonisation factor AcfC: a chemotactic protein with a role in hyperinfectivity.Scientific reports · 2018Article
- Analysis of Vibrio seventh pandemic island II and novel genomic islands in relation to attachment sequences among a wide variety of Vibrio cholerae strains.Microbiology and immunology · 2018Article
- Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh.BMC genomics · 2017Article
- The Lake Chad Basin, an Isolated and Persistent Reservoir of Vibrio cholerae O1: A Genomic Insight into the Outbreak in Cameroon, 2010.PloS one · 2016Article
- Article
- Rational development of guidelines for management of neonatal sepsis in developing countries.Current opinion in infectious diseases · 2015Review
- The role of China in the global spread of the current cholera pandemic.PLoS genetics · 2015Article
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Abstract
In August 2010, Pakistan experienced major floods and a subsequent cholera epidemic. To clarify the population dynamics and transmission of Vibrio cholerae in Pakistan, we sequenced the genomes of all V. cholerae O1 El Tor isolates and compared the sequences to a global collection of 146 V. cholerae strains. Within the global phylogeny, all isolates from Pakistan formed 2 new subclades (PSC-1 and PSC-2), lying in the third transmission wave of the seventh-pandemic lineage that could be distinguished by signature deletions and their antimicrobial susceptibilities. Geographically, PSC-1 isolates originated from the coast, whereas PSC-2 isolates originated from inland areas flooded by the Indus River. Single-nucleotide polymorphism accumulation analysis correlated river flow direction with the spread of PSC-2. We found at least 2 sources of cholera in Pakistan during the 2010 epidemic and illustrate the value of a global genomic data bank in contextualizing cholera outbreaks.
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