ArticleGigaScience2013
Galaxy tools to study genome diversity.
Article in GigaScience, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
11 citing papers in PubMed.
- Genomic evidence for the Old divergence of Southern European wolf populations.Proceedings. Biological sciences · 2020Article
- Genomic Variants Among ThreatenedG3 (Bethesda, Md.) · 2019Article
- Article
- Giraffe genome sequence reveals clues to its unique morphology and physiology.Nature communications · 2016Article
- Genome-wide analysis of signatures of selection in populations of African honey bees (Apis mellifera) using new web-based tools.BMC genomics · 2015Article
- AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces cerevisiae.PloS one · 2015Article
- The analysis of clonal diversity and therapy responses using STAT3 mutations as a molecular marker in large granular lymphocytic leukemia.Haematologica · 2015Article
- Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history.Nature communications · 2014Article
- Polar bears exhibit genome-wide signatures of bioenergetic adaptation to life in the arctic environment.Genome biology and evolution · 2014Article
- GigaDB: promoting data dissemination and reproducibility.Database : the journal of biological databases and curation · 2014Article
- Galaxy tools to study genome diversity.GigaScience · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
13 authors.
Funding
Abstract
backgroundIntra-species genetic variation can be used to investigate population structure, selection, and gene flow in non-model vertebrates; and due to the plummeting costs for genome sequencing, it is now possible for small labs to obtain full-genome variation data from their species of interest. However, those labs may not have easy access to, and familiarity with, computational tools to analyze those data.
resultsWe have created a suite of tools for the Galaxy web server aimed at handling nucleotide and amino-acid polymorphisms discovered by full-genome sequencing of several individuals of the same species, or using a SNP genotyping microarray. In addition to providing user-friendly tools, a main goal is to make published analyses reproducible. While most of the examples discussed in this paper deal with nuclear-genome diversity in non-human vertebrates, we also illustrate the application of the tools to fungal genomes, human biomedical data, and mitochondrial sequences.
conclusionsThis project illustrates that a small group can design, implement, test, document, and distribute a Galaxy tool collection to meet the needs of a particular community of biologists.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.