Evidence map›Paper›PMID 24376896›Full record

ArticlePloS one2013

Species-specificity of the BamA component of the bacterial outer membrane protein-assembly machinery.

Elena B Volokhina, Jan Grijpstra, Frank Beckers, Erika Lindh, Viviane Robert, Jan Tommassen, Martine P Bos

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Identification of the adhesive domain of AtaA fromFrontiers in bioengineering and biotechnology · 2022
    Article
  6. Article
  7. The big BAM theory: An open and closed case?Biochimica et biophysica acta. Biomembranes · 2020
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Elena B VolokhinaDepartment of Molecular Microbiology and Institute of Biomembranes, Utrecht University, Utrecht, The Netherlands.
Jan GrijpstraDepartment of Molecular Microbiology and Institute of Biomembranes, Utrecht University, Utrecht, The Netherlands.
Frank BeckersDepartment of Molecular Microbiology and Institute of Biomembranes, Utrecht University, Utrecht, The Netherlands.
Erika LindhDepartment of Molecular Microbiology and Institute of Biomembranes, Utrecht University, Utrecht, The Netherlands.
Viviane RobertDepartment of Molecular Microbiology and Institute of Biomembranes, Utrecht University, Utrecht, The Netherlands.
Jan TommassenDepartment of Molecular Microbiology and Institute of Biomembranes, Utrecht University, Utrecht, The Netherlands.
Martine P BosDepartment of Molecular Microbiology and Institute of Biomembranes, Utrecht University, Utrecht, The Netherlands.
Utrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The BamA protein is the key component of the Bam complex, the assembly machinery for outer membrane proteins (OMP) in gram-negative bacteria. We previously demonstrated that BamA recognizes its OMP substrates in a species-specific manner in vitro. In this work, we further studied species specificity in vivo by testing the functioning of BamA homologs of the proteobacteria Neisseria meningitidis, Neisseria gonorrhoeae, Bordetella pertussis, Burkholderia mallei, and Escherichia coli in E. coli and in N. meningitidis. We found that no BamA functioned in another species than the authentic one, except for N. gonorrhoeae BamA, which fully complemented a N. meningitidis bamA mutant. E. coli BamA was not assembled into the N. meningitidis outer membrane. In contrast, the N. meningitidis BamA protein was assembled into the outer membrane of E. coli to a significant extent and also associated with BamD, an essential accessory lipoprotein of the Bam complex.Various chimeras comprising swapped N-terminal periplasmic and C-terminal membrane-embedded domains of N. meningitidis and E. coli BamA proteins were also not functional in either host, although some of them were inserted in the OM suggesting that the two domains of BamA need to be compatible in order to function. Furthermore, conformational analysis of chimeric proteins provided evidence for a 16-stranded β-barrel conformation of the membrane-embedded domain of BamA.

Indexed as

Bacterial Outer Membrane ProteinsElectrophoresis, Polyacrylamide GelEscherichia coli ProteinsGenetic Complementation TestGram-Negative BacteriaImmunoblottingMultiprotein ComplexesPlasmidsProtein ConformationReverse Transcriptase Polymerase Chain ReactionSpecies SpecificityBacterial Outer Membrane ProteinsBamA protein, E coliEscherichia coli ProteinsMultiprotein Complexes

Identifiers

PMID24376896
PMCPMC3869937
OpenAlexW1978578532

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.