Evidence map›Paper›PMID 24376817›Full record

ArticlePloS one2013

Mutational and topological analysis of the Escherichia coli BamA protein.

Douglas F Browning, Sophie A Matthews, Amanda E Rossiter, Yanina R Sevastsyanovich, Mark Jeeves, Jessica L Mason, Timothy J Wells, Catherine A Wardius, Timothy J Knowles, Adam F Cunningham and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 40 citations in OpenAlex.

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  16. Monoclonal antibody targeting the β-barrel assembly machine ofProceedings of the National Academy of Sciences of the United States of America · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Douglas F BrowningInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Sophie A MatthewsInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Amanda E RossiterInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Yanina R SevastsyanovichInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Mark JeevesSchool of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Jessica L MasonInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Timothy J WellsInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Catherine A WardiusInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Timothy J KnowlesSchool of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Adam F CunninghamInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Vassiliy N BavroInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
Michael OverduinSchool of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Ian R HendersonInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
University of Birmingham · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F000472/1Biotechnology and Biological Sciences Research Council BB/G022054/1Medical Research Council G0801209
6 · The paper itself

Abstract

The multi-protein β-barrel assembly machine (BAM) of Escherichia coli is responsible for the folding and insertion of β-barrel containing integral outer membrane proteins (OMPs) into the bacterial outer membrane. An essential component of this complex is the BamA protein, which binds unfolded β-barrel precursors via the five polypeptide transport-associated (POTRA) domains in its N-terminus. The C-terminus of BamA contains a β-barrel domain, which tethers BamA to the outer membrane and is also thought to be involved in OMP insertion. Here we mutagenize BamA using linker scanning mutagenesis and demonstrate that all five POTRA domains are essential for BamA protein function in our experimental system. Furthermore, we generate a homology based model of the BamA β-barrel and test our model using insertion mutagenesis, deletion analysis and immunofluorescence to identify β-strands, periplasmic turns and extracellular loops. We show that the surface-exposed loops of the BamA β-barrel are essential.

Indexed as

Models, MolecularBacterial Outer Membrane ProteinsBlotting, WesternEscherichia coliEscherichia coli ProteinsFluorescent Antibody TechniqueMutagenesisPlasmidsProtein Structure, TertiaryBacterial Outer Membrane ProteinsBamA protein, E coliEscherichia coli Proteins

Identifiers

PMID24376817
PMCPMC3871556
OpenAlexW2070978351

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.