Evidence map›Paper›PMID 24376751›Full record

ArticlePloS one2013

Optimisation of the Schizosaccharomyces pombe urg1 expression system.

Adam T Watson, Yasukazu Daigaku, Saed Mohebi, Thomas J Etheridge, Charly Chahwan, Johanne M Murray, Antony M Carr

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Rice (Genes · 2021
    Article
  3. Article
  4. Article
  5. Genes · 2020
    Review
  6. Review
  7. Article
  8. Article
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  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Adam T WatsonGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, East Sussex, United Kingdom.
Yasukazu DaigakuGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, East Sussex, United Kingdom.
Saed MohebiGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, East Sussex, United Kingdom.
Thomas J EtheridgeGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, East Sussex, United Kingdom.
Charly ChahwanGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, East Sussex, United Kingdom.
Johanne M MurrayGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, East Sussex, United Kingdom.
Antony M CarrGenome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton, East Sussex, United Kingdom.
University of Sussex · GB

Funding

Medical Research Council G1100074
6 · The paper itself

Abstract

The ability to study protein function in vivo often relies on systems that regulate the presence and absence of the protein of interest. Two limitations for previously described transcriptional control systems that are used to regulate protein expression in fission yeast are: the time taken for inducing conditions to initiate transcription and the ability to achieve very low basal transcription in the "OFF-state". In previous work, we described a Cre recombination-mediated system that allows the rapid and efficient regulation of any gene of interest by the urg1 promoter, which has a dynamic range of approximately 75-fold and which is induced within 30-60 minutes of uracil addition. In this report we describe easy-to-use and versatile modules that can be exploited to significantly tune down Purg1 "OFF-levels" while maintaining an equivalent dynamic range. We also provide plasmids and tools for combining Purg1 transcriptional control with the auxin degron tag to help maintain a null-like phenotype. We demonstrate the utility of this system by improved regulation of HO-dependent site-specific DSB formation, by the regulation Rtf1-dependent replication fork arrest and by controlling Rhp18(Rad18)-dependent post replication repair.

Indexed as

ArginineEndonucleasesGene ExpressionGenetic EngineeringGenetic LociHydroxyureaIndoleacetic AcidsmRNA Cleavage and Polyadenylation FactorsPhenotypePlasmidsPromoter Regions, GeneticRNA, MessengerRNA StabilitySchizosaccharomycesSchizosaccharomyces pombe ProteinsTranscription, GeneticArginineEndonucleasesHydroxyureaIndoleacetic AcidsMmi1 protein, S pombemRNA Cleavage and Polyadenylation FactorsRNA, MessengerSchizosaccharomyces pombe Proteins

Identifiers

PMID24376751
PMCPMC3869809
OpenAlexW2019065613

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.