Evidence map›Paper›PMID 24376526›Full record

ArticlePloS one2013

Vitamin D receptor, an important transcription factor associated with aldosterone-producing adenoma.

Changlong Bi, Bo Li, Lili Du, Lishan Wang, Yingqi Zhang, Zhifeng Cheng, Aixia Zhai

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Adrenal disorders: Is there Any role for vitamin D?Reviews in endocrine & metabolic disorders · 2017
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Changlong BiDepartment of Endocrinology, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Bo LiDepartment of Endocrinology, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Lili DuDepartment of Endocrinology, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Lishan WangFengHe (ShangHai) Information Technology Co., Ltd., Shanghai, China ; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai ,China.
Yingqi ZhangDepartment of Endocrinology, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Zhifeng ChengDepartment of Endocrinology, Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Aixia ZhaiDepartment of Microbiology, Harbin Medical University, Harbin, China ; Heilongjiang Provincial Science and Technology Innovation Team in Higher Education Institutes for Infection and Immunity, Harbin Medical University, Harbin , China ; Heilongjiang Provincial Key Laboratory for Infection and Immunity, Harbin Medical University, Harbin, China.
Harbin Medical University · CNFourth Affiliated Hospital of Harbin Medical University · CNShanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveTo explore the endocrine mechanisms of aldosterone-producing adenoma (APA) by using the microarray expression profiles of normal and APA samples.

methodsThe gene expression profile GSE8514 was downloaded from Gene Expression Omnibus database, including samples from normal adrenals (n = 5) and APAs (n = 10). The differentially expressed genes (DEGs) were identified by samr package and endocrine DEGs were obtained according to Clinical Genome Database. Then, functional enrichment analysis of screened DEGs was performed by DAVID (Database for Annotation, Visualization and Integrated Discovery). Finally, a regulatory network was constructed to screen endocrine genes related with adrenal dysfunction and pathway enrichment analysis for the constructed network was performed.

resultsA total of 2149 DEGs were identified including 379 up- and 1770 down-regulated genes. And 26 endocrine genes were filtered from the DEGs. Furthermore, the down-regulated DEGs are mainly related to protein kinase cascade, response to molecule of bacterial origin, response to lipopolysaccharide, cellular macromolecule catabolic process and macromolecule catabolic process, while the up-regulated DEGs are related with regulation of ion transport. The target genes of VDR (vitamin D receptor), one of the three endocrine genes differentially expressed in the regulatory network, were endocrine genes including CYP24A1 (25-hydroxyvitamin D-24-hydroxylase) and PTH (parathyroid hormone). Three pathways may be associated with APA pathogenesis including cytokine-cytokine receptor interaction, pathways in cancer and autoimmune thyroid disease.

conclusionThe VDR is the most significant transcription factor and related endocrine genes might play important roles in the endocrine mechanisms of APA.

Indexed as

AdenomaAdrenal Gland NeoplasmsAdultAldosteroneCluster AnalysisDown-RegulationGene Expression Regulation, NeoplasticGene OntologyGene Regulatory NetworksHumansReceptors, CalcitriolTranscriptomeUp-RegulationAldosteroneReceptors, Calcitriol

Identifiers

PMID24376526
PMCPMC3869669
OpenAlexW2001555359

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.