Evidence map›Paper›PMID 24375407›Full record

ArticleThe Journal of biological chemistry2014

The three-dimensional structure of the extracellular adhesion domain of the sialic acid-binding adhesin SabA from Helicobacter pylori.

Siew Siew Pang, Stanley Thai Son Nguyen, Andrew J Perry, Christopher J Day, Santosh Panjikar, Joe Tiralongo, James C Whisstock, Terry Kwok

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
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  7. Novel therapeutic regimens againstFrontiers in microbiology · 2024
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  9. Exploring the inhibitory potential ofFrontiers in molecular biosciences · 2023
    Article
  10. Article
  11. Article
  12. Comparative Structural Dynamics of Isoforms ofFrontiers in molecular biosciences · 2022
    Article
  13. Toxins · 2021
    Review
  14. Article
  15. Review
  16. Virulence of Helicobacter pylori outer membrane proteins: an updated review.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Review
  17. Article
  18. Article
  19. Article
  20. TheThe EMBO journal · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Siew Siew PangDepartment of Biochemistry and Molecular Biology, Monash University, Clayton Campus, Melbourne, Victoria 3800 Australia.
Stanley Thai Son NguyenDepartment of Biochemistry and Molecular Biology, Monash University, Clayton Campus, Melbourne, Victoria 3800 Australia; Australian Research Council Centre of Excellence in Structural and Functional Microbial Genomics, Monash University, Clayton Campus, Melbourne, Victoria 3800 Australia.
Andrew J PerryDepartment of Biochemistry and Molecular Biology, Monash University, Clayton Campus, Melbourne, Victoria 3800 Australia.
Christopher J DayInstitute for Glycomics, Griffith University, Gold Coast Campus, Queensland 4222, Australia.
Santosh PanjikarDepartment of Biochemistry and Molecular Biology, Monash University, Clayton Campus, Melbourne, Victoria 3800 Australia; Australian Synchrotron, 800 Blackburn Road, Clayton, Melbourne, Victoria 3168, Australia.
Joe TiralongoInstitute for Glycomics, Griffith University, Gold Coast Campus, Queensland 4222, Australia.
James C WhisstockDepartment of Biochemistry and Molecular Biology, Monash University, Clayton Campus, Melbourne, Victoria 3800 Australia; Australian Research Council Centre of Excellence in Structural and Functional Microbial Genomics, Monash University, Clayton Campus, Melbourne, Victoria 3800 Australia. Electronic address: james.whisstock@monash.edu.
Terry KwokDepartment of Biochemistry and Molecular Biology, Monash University, Clayton Campus, Melbourne, Victoria 3800 Australia; Department of Microbiology, Monash University, Clayton Campus, Melbourne, Victoria 3800 Australia. Electronic address: terry.kwok@monash.edu.
Monash University · AUGriffith University · AUAustralian Research Council · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The gastric pathogen Helicobacter pylori is a major cause of acute chronic gastritis and the development of stomach and duodenal ulcers. Chronic infection furthermore predisposes to the development of gastric cancer. Crucial to H. pylori survival within the hostile environment of the digestive system are the adhesins SabA and BabA; these molecules belong to the same protein family and permit the bacteria to bind tightly to sugar moieties Lewis(B) and sialyl-Lewis(X), respectively, on the surface of epithelial cells lining the stomach and duodenum. To date, no representative SabA/BabA structure has been determined, hampering the development of strategies to eliminate persistent H. pylori infections that fail to respond to conventional therapy. Here, using x-ray crystallography, we show that the soluble extracellular adhesin domain of SabA shares distant similarity to the tetratricopeptide repeat fold family. The molecule broadly resembles a golf putter in shape, with the head region featuring a large cavity surrounded by loops that vary in sequence between different H. pylori strains. The N-terminal and C-terminal helices protrude at right angles from the head domain and together form a shaft that connects to a predicted outer membrane protein-like β-barrel trans-membrane domain. Using surface plasmon resonance, we were able to detect binding of the SabA adhesin domain to sialyl-Lewis(X) and Lewis(X) but not to Lewis(A), Lewis(B), or Lewis(Y). Substitution of the highly conserved glutamine residue 159 in the predicted ligand-binding pocket abrogates the binding of the SabA adhesin domain to sialyl-Lewis(X) and Lewis(X). Taken together, these data suggest that the adhesin domain of SabA is sufficient in isolation for specific ligand binding.

Indexed as

Adhesins, BacterialAmino Acid SequenceAmino Acid SubstitutionBinding SitesConserved SequenceCrystallography, X-RayGlutamineHelicobacter pyloriLewis X AntigenLigandsMolecular Sequence DataN-Acetylneuraminic AcidProtein Structure, SecondaryProtein Structure, TertiarySialyl Lewis X AntigenSurface Plasmon ResonanceAdhesins, BacterialGlutamineLewis X AntigenLigandsN-Acetylneuraminic AcidSabA protein, Helicobacter pyloriSialyl Lewis X AntigenBacterial AdhesionCarbohydrate Binding ProteinHelicobacter pyloriMembrane ProteinsOuter Membrane ProteinX-ray Crystallography

Identifiers

PMID24375407
PMCPMC3945300
OpenAlexW1972918997

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.