Evidence map›Paper›PMID 24375136›Full record

ArticleApplied and environmental microbiology2014

Use of quantitative real-time PCR for direct detection of serratia marcescens in marine and other aquatic environments.

Jessica Joyner, David Wanless, Christopher D Sinigalliano, Erin K Lipp

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Comparative Analysis of How the Fecal Microbiota of Green-Winged Saltator (Animals : an open access journal from MDPI · 2024
    Article
  4. Frontiers in cellular and infection microbiology · 2024
    Article
  5. International journal of environmental research and public health · 2023
    Article
  6. Article
  7. Article
  8. Intestinal Dominance byMicroorganisms · 2021
    Article
  9. Article
  10. Characteristics of Isolates ofFrontiers in microbiology · 2021
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Complementary approaches to diagnosing marine diseases: a union of the modern and the classic.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jessica JoynerOdum School of Ecology, University of Georgia, Athens, Georgia, USA.
David Wanless
Christopher D Sinigalliano
Erin K Lipp
NOAA Atlantic Oceanographic and Meteorological Laboratories · USUniversity of Georgia · US

Funding

Toxic Harmful Algal Blooms (HABs)P50ES012736 · NIEHS · UNIVERSITY OF MIAMI ROSENTEIL SCHOOL · PI FLEMING, LORA ELDERKIN · 2004 to 2010
$2.7M
NIEHS NIH HHS P50 ES012736
6 · The paper itself

Abstract

Serratia marcescens is the etiological agent of acroporid serratiosis, a distinct form of white pox disease in the threatened coral Acropora palmata. The pathogen is commonly found in untreated human waste in the Florida Keys, which may contaminate both nearshore and offshore waters. Currently there is no direct method for detection of this bacterium in the aquatic or reef environment, and culture-based techniques may underestimate its abundance in marine waters. A quantitative real-time PCR assay was developed to detect S. marcescens directly from environmental samples, including marine water, coral mucus, sponge tissue, and wastewater. The assay targeted the luxS gene and was able to distinguish S. marcescens from other Serratia species with a reliable quantitative limit of detection of 10 cell equivalents (CE) per reaction. The method could routinely discern the presence of S. marcescens for as few as 3 CE per reaction, but it could not be reliably quantified at this level. The assay detected environmental S. marcescens in complex sewage influent samples at up to 761 CE ml(-1) and in septic system-impacted residential canals in the Florida Keys at up to 4.1 CE ml(-1). This detection assay provided rapid quantitative abilities and good sensitivity and specificity, which should offer an important tool for monitoring this ubiquitous pathogen that can potentially impact both human health and coral health.

Indexed as

Water MicrobiologyAnimalsAnthozoaBacteriological TechniquesFloridaHumansPoriferaReal-Time Polymerase Chain ReactionSensitivity and SpecificitySerratia marcescensSewageSewage

Identifiers

PMID24375136
PMCPMC3957607
OpenAlexW1972724633

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.