Evidence map›Paper›PMID 24374352›Full record

ArticleGenetics2014

Large-scale mapping of transposable element insertion sites using digital encoding of sample identity.

Daryl M Gohl, Limor Freifeld, Marion Silies, Jennifer J Hwa, Mark Horowitz, Thomas R Clandinin

Abstract read
In one paragraph

Article in Genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Daryl M GohlDepartment of Neurobiology, Stanford University, Stanford, California 94305.
Limor Freifeld
Marion Silies
Jennifer J Hwa
Mark Horowitz
Thomas R Clandinin

Funding

Training Program in Basic NeuroscienceT32MH020016 · NIMH · STANFORD UNIVERSITY · PI Justin L Gardner, Merritt C Maduke · 1997 to 2026
$16.2M
Training in Developmental Cardiovascular BiologyT32HL007544 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SRIVASTAVA, DEEPAK · 1985 to 2021
$4.5M
Dissecting the functional anatomy of the visual system: a new way forwardDP1OD003530 · OD · STANFORD UNIVERSITY · PI CLANDININ, THOMAS ROBERT · 2007 to 2011
$3.9M
Dissecting Neural Circuit Computations in the Peripheral Visual SystemR01EY022638 · NEI · STANFORD UNIVERSITY · PI CLANDININ, THOMAS ROBERT · 2012 to 2021
$3.5M
Identification of the neural circuitry underlying motion vision in DrosophilaF32EY020040 · NEI · STANFORD UNIVERSITY · PI GOHL, DARYL · 2010 to 2013
$161k
NEI NIH HHS F32 EY020040NEI NIH HHS F32EY020040NEI NIH HHS R01 EY022638NHLBI NIH HHS T32 HL007544NIH HHS DP1 OD003530NIH HHS DP1OD003530NIMH NIH HHS T32 MH020016
6 · The paper itself

Abstract

Determining the genomic locations of transposable elements is a common experimental goal. When mapping large collections of transposon insertions, individualized amplification and sequencing is both time consuming and costly. We describe an approach in which large numbers of insertion lines can be simultaneously mapped in a single DNA sequencing reaction by using digital error-correcting codes to encode line identity in a unique set of barcoded pools.

Indexed as

DNA Transposable ElementsAnimalsChromosome MappingDrosophila melanogasterGenome, InsectGenomicsHigh-Throughput Nucleotide SequencingSequence Analysis, DNADNA Transposable ElementsDrosophila melanogastermappingnext-generation sequencingtransposable elements

Identifiers

PMID24374352
PMCPMC3948795

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.