Evidence map›Paper›PMID 24374161›Full record

ReviewTrends in molecular medicine2014

iPSC-derived neurons as a higher-throughput readout for autism: promises and pitfalls.

Daria Prilutsky, Nathan P Palmer, Niklas Smedemark-Margulies, Thorsten M Schlaeger, David M Margulies, Isaac S Kohane

Abstract readReview
In one paragraph

Review in Trends in molecular medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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  17. Epigenetic Research in Neuropsychiatric Disorders: the "Tissue Issue".Current behavioral neuroscience reports · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Daria PrilutskyCenter for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.
Nathan P PalmerCenter for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.
Niklas Smedemark-MarguliesAmherst College Class of 2013 Undergraduate Neuroscience Program, Amherst, MA, 01002, USA.
Thorsten M SchlaegerStem Cell Program, Boston Children's Hospital, Boston, MA 02115, USA.
David M MarguliesCenter for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA; Divisions of Genetics and Developmental Medicine, Department of Pediatrics, Harvard Medical School, Boston, MA 02115, USA.
Isaac S KohaneCenter for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA; Department of Pediatrics, Harvard Medical School, Boston, MA 02115, USA. Electronic address: Isaac_Kohane@hms.harvard.edu.

Funding

Coordinating Center for the Undiagnosed Diseases NetworkU01HG007530 · NHGRI · HARVARD MEDICAL SCHOOL · PI KOHANE, ISAAC S. · 2014 to 2022
$30.2M
Modeling the temporal succession of phenotypes & environnnental cuesP50MH094267 · NIMH · UNIVERSITY OF CHICAGO · PI RZHETSKY, ANDREY · 2011 to 2015
$10.2M
NHGRI NIH HHS U01 HG007530NIMH NIH HHS P50 MH094267NIMH NIH HHS P50MH94267
6 · The paper itself

Abstract

The elucidation of disease etiologies and establishment of robust, scalable, high-throughput screening assays for autism spectrum disorders (ASDs) have been impeded by both inaccessibility of disease-relevant neuronal tissue and the genetic heterogeneity of the disorder. Neuronal cells derived from induced pluripotent stem cells (iPSCs) from autism patients may circumvent these obstacles and serve as relevant cell models. To date, derived cells are characterized and screened by assessing their neuronal phenotypes. These characterizations are often etiology-specific or lack reproducibility and stability. In this review, we present an overview of efforts to study iPSC-derived neurons as a model for autism, and we explore the plausibility of gene expression profiling as a reproducible and stable disease marker.

Indexed as

AnimalsAutistic DisorderBiomarkersCell Culture TechniquesCell DifferentiationGene Expression ProfilingGene Regulatory NetworksHumansInduced Pluripotent Stem CellsNeuronsPhenotypeTranscriptomeBiomarkersautismgene expressionhigh-throughput assayiPSC

Identifiers

PMID24374161
PMCPMC4117413

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.