Evidence map›Paper›PMID 24373746›Full record

ArticleMolecular cell2013

Nucleotide and partner-protein control of bacterial replicative helicase structure and function.

Melania S Strycharska, Ernesto Arias-Palomo, Artem Y Lyubimov, Jan P Erzberger, Valerie L O'Shea, Carlos J Bustamante, James M Berger

Abstract readVideo-Audio Media
In one paragraph

Article in Molecular cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Melania S StrycharskaBiophysics Program, University of California, Berkeley, Berkeley, CA 94720-3220, USA.
Ernesto Arias-PalomoDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Artem Y LyubimovThe James H Clark Center, Stanford School of Medicine, Stanford, CA 94305, USA.
Jan P ErzbergerInstitute of Molecular Biology and Biophysics, ETH Zürich, 8093 Zürich, Switzerland.
Valerie L O'SheaDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Carlos J BustamanteBiophysics Program, University of California, Berkeley, Berkeley, CA 94720-3220, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815-6789, USA; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3220, USA.
James M BergerBiophysics Program, University of California, Berkeley, Berkeley, CA 94720-3220, USA; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3220, USA. Electronic address: jmberger@jhmi.edu.

Funding

Structure/Function Studies of DNA Replication InitiationR01GM071747 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BERGER, JAMES M. · 2005 to 2016
$4.0M
Investigation of DnaB helicase loading for initiating DNA replicationF32GM090803 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI O'SHEA, VALERIE LYNN · 2010 to 2011
$104k
NIGMS NIH HHS F32GM090803NIGMS NIH HHS R01 GM071747NIGMS NIH HHS R01-GM071747
6 · The paper itself

Abstract

Cellular replication forks are powered by ring-shaped, hexameric helicases that encircle and unwind DNA. To better understand the molecular mechanisms and control of these enzymes, we used multiple methods to investigate the bacterial replicative helicase, DnaB. A 3.3 Å crystal structure of Aquifex aeolicus DnaB, complexed with nucleotide, reveals a newly discovered conformational state for this motor protein. Electron microscopy and small angle X-ray scattering studies confirm the state seen crystallographically, showing that the DnaB ATPase domains and an associated N-terminal collar transition between two physical states in a nucleotide-dependent manner. Mutant helicases locked in either collar state are active but display different capacities to support critical activities such as duplex translocation and primase-dependent RNA synthesis. Our findings establish the DnaB collar as an autoregulatory hub that controls the ability of the helicase to transition between different functional states in response to both nucleotide and replication initiation/elongation factors.

Indexed as

DNA ReplicationAdenosine TriphosphateAmino Acid SequenceBacterial ProteinsBinding SitesCrystallography, X-RayDNA, BacterialDnaB HelicasesEscherichia coli ProteinsHydrolysisMicroscopy, ElectronModels, MolecularMolecular Sequence DataMutationNucleotidesProtein ConformationAdenosine TriphosphateBacterial ProteinsDNA, BacterialDnaB HelicasesdnaB protein, E coliDnaC protein, E coliEscherichia coli ProteinsNucleotidesRecombinant ProteinsRNA, Bacterial

Identifiers

PMID24373746
PMCPMC3929961

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.