Evidence map›Paper›PMID 24371276›Full record

ArticleNucleic acids research2014

Distinct tRNA recognition strategies used by a homologous family of editing domains prevent mistranslation.

Mom Das, Oscar Vargas-Rodriguez, Yuki Goto, Hiroaki Suga, Karin Musier-Forsyth

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Frontiers in microbiology · 2024
    Article
  3. Review
  4. Distinct localization of chiral proofreaders resolves organellar translation conflict in plants.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Article
  6. HumanThe Journal of biological chemistry · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Conformational and chemical selection by aProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  13. Review
  14. Article
  15. Article
  16. Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. Bacterial transfer RNAs.FEMS microbiology reviews · 2015
    Review
  18. Article
  19. Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Mom DasDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA, Ohio State Biochemistry Program, The Ohio State University, Columbus, OH 43210, USA, Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA and Department of Chemistry, Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo 113-0033, Japan.
Oscar Vargas-Rodriguez
Yuki Goto
Hiroaki Suga
Karin Musier-Forsyth
The Ohio State University · USThe University of Tokyo · JP

Funding

CLASS II AMINOACYL-TRNA SYNTHETASE SUBSTRATE RECOGNITIONR01GM049928 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MUSIER-FORSYTH, KARIN M · 1996 to 2012
$4.0M
NIGMS NIH HHS R01 GM049928
6 · The paper itself

Abstract

Errors in protein synthesis due to mispairing of amino acids with tRNAs jeopardize cell viability. Several checkpoints to prevent formation of Ala- and Cys-tRNA(Pro) have been described, including the Ala-specific editing domain (INS) of most bacterial prolyl-tRNA synthetases (ProRSs) and an autonomous single-domain INS homolog, YbaK, which clears Cys-tRNA(Pro) in trans. In many species where ProRS lacks an INS domain, ProXp-ala, another single-domain INS-like protein, is responsible for editing Ala-tRNA(Pro). Although the amino acid specificity of these editing domains has been established, the role of tRNA sequence elements in substrate selection has not been investigated in detail. Critical recognition elements for aminoacylation by bacterial ProRS include acceptor stem elements G72/A73 and anticodon bases G35/G36. Here, we show that ProXp-ala and INS require these same acceptor stem and anticodon elements, respectively, whereas YbaK lacks inherent tRNA specificity. Thus, these three related domains use divergent approaches to recognize tRNAs and prevent mistranslation. Whereas some editing domains have borrowed aspects of tRNA recognition from the parent aminoacyl-tRNA synthetase, relaxed tRNA specificity leading to semi-promiscuous editing may offer advantages to cells.

Indexed as

Protein BiosynthesisAlanineAmino Acyl-tRNA SynthetasesAnticodonCarrier ProteinsCysteineEscherichia coliEscherichia coli ProteinsProtein Structure, TertiaryRNA, Transfer, Amino AcylRNA, Transfer, ProAlanineAmino Acyl-tRNA SynthetasesAnticodonCarrier ProteinsCysteineEscherichia coli Proteinsprolyl T RNA synthetaseRNA, Transfer, Amino AcylRNA, Transfer, ProYbaK protein, E coli

Identifiers

PMID24371276
PMCPMC3973320
OpenAlexW2104352360

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.