Evidence map›Paper›PMID 24371270›Full record

ArticleNucleic acids research2014

Inhibition of translation by IFIT family members is determined by their ability to interact selectively with the 5'-terminal regions of cap0-, cap1- and 5'ppp- mRNAs.

Parimal Kumar, Trevor R Sweeney, Maxim A Skabkin, Olga V Skabkina, Christopher U T Hellen, Tatyana V Pestova

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 137 papers.

0numbers the graph read from it
0cells of the map it votes in
137citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

137 citing papers in PubMed, 195 citations in OpenAlex.

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  20. Downregulation of the mThe Journal of biological chemistry · 2024
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77 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Parimal KumarDepartment of Cell Biology, SUNY Downstate Medical Center, 450 Clarkson Avenue, Brooklyn, NY 11203, USA.
Trevor R Sweeney
Maxim A Skabkin
Olga V Skabkina
Christopher U T Hellen
Tatyana V Pestova
SUNY Downstate Health Sciences University · US

Funding

SCANNING PROCESS IN EUKARYOTIC TRANSLATIONR01GM059660 · NIGMS · SUNY DOWNSTATE MEDICAL CENTER · PI PESTOVA, TATYANA V · 1999 to 2016
$4.7M
IRES-mediated translation initiation on viral mRNAsR01AI051340 · NIAID · SUNY DOWNSTATE MEDICAL CENTER · PI HELLEN, CHRISTOPHER ULRICH TRISTRAM · 2002 to 2013
$3.6M
IRES-mediated translation initiation on viral mRNAsR56AI051340 · NIAID · SUNY DOWNSTATE MEDICAL CENTER · PI HELLEN, CHRISTOPHER ULRICH TRISTRAM · 2008 to 2015
$856k
NIAID NIH HHS AI51340NIAID NIH HHS R56 AI051340NIGMS NIH HHS GM59660
6 · The paper itself

Abstract

Ribosomal recruitment of cellular mRNAs depends on binding of eIF4F to the mRNA's 5'-terminal 'cap'. The minimal 'cap0' consists of N7-methylguanosine linked to the first nucleotide via a 5'-5' triphosphate (ppp) bridge. Cap0 is further modified by 2'-O-methylation of the next two riboses, yielding 'cap1' (m7GpppNmN) and 'cap2' (m7GpppNmNm). However, some viral RNAs lack 2'-O-methylation, whereas others contain only ppp- at their 5'-end. Interferon-induced proteins with tetratricopeptide repeats (IFITs) are highly expressed effectors of innate immunity that inhibit viral replication by incompletely understood mechanisms. Here, we investigated the ability of IFIT family members to interact with cap1-, cap0- and 5'ppp- mRNAs and inhibit their translation. IFIT1 and IFIT1B showed very high affinity to cap-proximal regions of cap0-mRNAs (K1/2,app ∼9 to 23 nM). The 2'-O-methylation abrogated IFIT1/mRNA interaction, whereas IFIT1B retained the ability to bind cap1-mRNA, albeit with reduced affinity (K1/2,app ∼450 nM). The 5'-terminal regions of 5'ppp-mRNAs were recognized by IFIT5 (K1/2,app ∼400 nM). The activity of individual IFITs in inhibiting initiation on a specific mRNA was determined by their ability to interact with its 5'-terminal region: IFIT1 and IFIT1B efficiently outcompeted eIF4F and abrogated initiation on cap0-mRNAs, whereas inhibition on cap1- and 5'ppp- mRNAs by IFIT1B and IFIT5 was weaker and required higher protein concentrations.

Indexed as

Peptide Chain Initiation, TranslationalAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsBinding, CompetitiveCarrier ProteinsEukaryotic Initiation Factor-4EEukaryotic Initiation Factor-4FIntracellular Signaling Peptides and ProteinsNeoplasm ProteinsProteinsRecombinant ProteinsRibosomesRNA-Binding ProteinsRNA CapsRNA, TransferAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsCarrier ProteinsEukaryotic Initiation Factor-4EEukaryotic Initiation Factor-4FIFIT1 protein, humanIFIT2 protein, humanIFIT3 protein, humanIFIT5 protein, humanIntracellular Signaling Peptides and ProteinsNeoplasm ProteinsProteinsRecombinant ProteinsRNA-Binding ProteinsRNA CapsRNA, Transfer

Identifiers

PMID24371270
PMCPMC3950709
OpenAlexW2058492139

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.