ArticleJournal of genetics2013
Complete sequence of the mitochondrial genome of Odontamblyopus rubicundus (Perciformes: Gobiidae): genome characterization and phylogenetic analysis.
Article in Journal of genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 39 citations in OpenAlex.
- Mitochondrial Genome and Phylogenetic Analysis of Rhinogobius virgigena.Biochemical genetics · 2026Article
- Adaptability and Evolution of Gobiidae: A Genetic Exploration.Animals : an open access journal from MDPI · 2022Article
- The complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2019Article
- Complete mitochondrial genome of freshwater goby Rhinogobius cliffordpopei (Perciformes, Gobiidae): genome characterization and phylogenetic analysis.Genes & genomics · 2018Article
- The complete mitochondrial genome characterization ofMitochondrial DNA. Part B, Resources · 2018Article
- Complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2018Article
- Complete mitochondrial genome of Red bigeye (Mitochondrial DNA. Part B, Resources · 2018Article
- The complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2018Article
- The complete mitochondrial genome characterization ofMitochondrial DNA. Part B, Resources · 2017Article
- Complete mitochondrial genome of Japanese bigeye (Mitochondrial DNA. Part B, Resources · 2016Article
- Assembly and variation analyses of Clarias batrachus mitogenome retrieved from WGS data and its phylogenetic relationship with other catfishes.Meta gene · 2015Article
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Odontamblyopus rubicundus is a species of gobiid fishes, inhabits muddy-bottomed coastal waters. In this paper, the first complete mitochondrial genome sequence of O. rubicundus is reported. The complete mitochondrial genome sequence is 17119 bp in length and contains 13 protein-coding genes, two rRNA genes, 22 tRNA genes, a control region and an L-strand origin as in other teleosts. Most mitochondrial genes are encoded on H-strand except for ND6 and seven tRNA genes. Some overlaps occur in protein-coding genes and tRNAs ranging from 1 to 7 bp. The possibly nonfunctional L-strand origin folded into a typical stem-loop secondary structure and a conserved motif (5'-GCCGG-3') was found at the base of the stem within the tRNACys gene. The TAS, CSB-2 and CSB-3 could be detected in the control region. However, in contrast to most of other fishes, the central conserved sequence block domain and the CSB-1 could not be recognized in O. rubicundus, which is consistent with Acanthogobius hasta (Gobiidae). In addition, phylogenetic analyses based on different sequences of species of Gobiidae and different methods showed that the classification of O. rubicundus into Odontamblyopus due to morphology is debatable.
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