ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2014
EST-SNP discovery and dense genetic mapping in lentil (Lens culinaris Medik.) enable candidate gene selection for boron tolerance.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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29 citing papers in PubMed, 83 citations in OpenAlex.
- Omics-Driven Strategies for Developing Saline-Smart Lentils: A Comprehensive Review.International journal of molecular sciences · 2024Review
- Lentil adaptation to drought stress: response, tolerance, and breeding approaches.Frontiers in plant science · 2024Review
- Next-Generation-Sequencing-Based Simple Sequence Repeat (SSR) Marker Development and Linkage Mapping in Lentil (Life (Basel, Switzerland) · 2023Article
- Genomic selection for target traits in the Australian lentil breeding program.Frontiers in plant science · 2023Article
- The Prospects of gene introgression from crop wild relatives into cultivated lentil for climate change mitigation.Frontiers in plant science · 2023Review
- Omics Path to Increasing Productivity in Less-Studied Crops Under Changing Climate-Lentil a Case Study.Frontiers in plant science · 2022Review
- Prospects of next generation sequencing in lentil breeding.Molecular biology reports · 2020Review
- Identification of genomic regions associated with early plant vigour in lentil (Journal of genetics · 2020Article
- Genetic dissection of grain iron and zinc concentrations in lentil (Journal of genetics · 2019Article
- Towards Exploitation of Adaptive Traits for Climate-Resilient Smart Pulses.International journal of molecular sciences · 2019Review
- Genetic Diversity Linked to Haplotype Variation in the World Core Collection ofFrontiers in plant science · 2019Article
- Construction of the First SNP-Based Linkage Map Using Genotyping-by-Sequencing and Mapping of the Male-Sterility Gene in Leaf Chicory.Frontiers in plant science · 2019Article
- Molecular mapping of aluminium resistance loci based on root re-growth and Al-induced fluorescent signals (callose accumulation) in lentil (Lens culinaris Medikus).Molecular biology reports · 2018Article
- Article
- Analysis of an intraspecific RIL population uncovers genomic segments harbouring multiple QTL for seed relevant traits in lentil (Physiology and molecular biology of plants : an international journal of functional plant biology · 2017Article
- Transcriptome analysis of lentil (Lens culinaris Medikus) in response to seedling drought stress.BMC genomics · 2017Article
- Discrimination of boron tolerance inPlant methods · 2017Article
- Molecular Breeding for Ascochyta Blight Resistance in Lentil: Current Progress and Future Directions.Frontiers in plant science · 2017Review
- Article
- Generation and Characterisation of a Reference Transcriptome for Lentil (Lens culinaris Medik.).International journal of molecular sciences · 2016Article
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Large-scale SNP discovery and dense genetic mapping in a lentil intraspecific cross permitted identification of a single chromosomal region controlling tolerance to boron toxicity, an important breeding objective. Lentil (Lens culinaris Medik.) is a highly nutritious food legume crop that is cultivated world-wide. Until recently, lentil has been considered a genomic 'orphan' crop, limiting the feasibility of marker-assisted selection strategies in breeding programs. The present study reports on the identification of single-nucleotide polymorphisms (SNPs) from transcriptome sequencing data, utilisation of expressed sequence tag (EST)-derived simple sequence repeat (SSR) and SNP markers for construction of a gene-based genetic linkage map, and identification of markers in close linkage to major QTLs for tolerance to boron (B) toxicity. A total of 2,956 high-quality SNP markers were identified from a lentil EST database. Sub-sets of 546 SSRs and 768 SNPs were further used for genetic mapping of an intraspecific mapping population (Cassab × ILL2024) that exhibits segregation for B tolerance. Comparative analysis of the lentil linkage map with the sequenced genomes of Medicago truncatula Gaertn., soybean (Glycine max [L.] Merr.) and Lotus japonicus L. indicated blocks of conserved macrosynteny, as well as a number of rearrangements. A single genomic region was found to be associated with variation for B tolerance in lentil, based on evaluation performed over 2 years. Comparison of flanking markers to genome sequences of model species (M. truncatula, soybean and Arabidopsis thaliana) identified candidate genes that are functionally associated with B tolerance, and could potentially be used for diagnostic marker development in lentil.
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