Evidence map›Paper›PMID 24370259›Full record

ReviewProtein and peptide letters2014

Characterization of protein unfolding with solid-state nanopores.

Jiali Li, Daniel Fologea, Ryan Rollings, Brad Ledden

Abstract readReview
In one paragraph

Review in Protein and peptide letters, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Solid-State Nanopores for Biomolecular Analysis and Detection.Advances in biochemical engineering/biotechnology · 2024
    Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Nanopore Technology for the Application of Protein Detection.Nanomaterials (Basel, Switzerland) · 2021
    Review
  13. Article
  14. Application of Solid-State Nanopore in Protein Detection.International journal of molecular sciences · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Dynamics of a Molecular Plug Docked onto a Solid-State Nanopore.The journal of physical chemistry letters · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jiali Li
Daniel Fologea
Ryan Rollings
Brad LeddenDepartment of Physics, Room 226, University of Arkansas, 825 w Dickson Street, Fayetteville, AR 72701, USA. jialili@uark.edu.

Funding

Exploration of Solid-state Nanopore Reading Labeled Linear DNA SequenceR21HG004776 · NHGRI · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI LI, JIALI · 2008 to 2012
$1.0M
Solid-state Nanopore Identification for ProteinsR21HG003290 · NHGRI · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI LI, JIALI · 2004 to 2009
$680k
NHGRI NIH HHS NIH R21HG003290NHGRI NIH HHS NIH R21HG004776NHGRI NIH HHS R21 HG003290NHGRI NIH HHS R21 HG004776PHS HHS ABI0710PHS HHS NCRR/1P30RR031154-01
6 · The paper itself

Abstract

In this work, we review the process of protein unfolding characterized by a solid-state nanopore based device. The occupied or excluded volume of a protein molecule in a nanopore depends on the protein's conformation or shape. A folded protein has a larger excluded volume in a nanopore thus it blocks more ionic current flow than its unfolded form and produces a greater current blockage amplitude. The time duration a protein stays in a pore also depends on the protein's folding state. We use Bovine Serum Albumin (BSA) as a model protein to discuss this current blockage amplitude and the time duration associated with the protein unfolding process. BSA molecules were measured in folded, partially unfolded, and completely unfolded conformations in solid-state nanopores. We discuss experimental results, data analysis, and theoretical considerations of BSA protein unfolding measured with silicon nitride nanopores. We show this nanopore method is capable of characterizing a protein's unfolding process at single molecule level. Problems and future studies in characterization of protein unfolding using a solid-state nanopore device will also be discussed.

Indexed as

NanoporesProtein UnfoldingAnimalsCattleModels, MolecularProtein TransportSerum Albumin, BovineSerum Albumin, Bovine

Identifiers

PMID24370259
PMCPMC4188535

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.