Evidence map›Paper›PMID 24367295›Full record

ArticleFrontiers in neural circuits2013

Functional analysis of ultra high information rates conveyed by rat vibrissal primary afferents.

André M Chagas, Lucas Theis, Biswa Sengupta, Maik C Stüttgen, Matthias Bethge, Cornelius Schwarz

Open access · goldAbstract read
In one paragraph

Article in Frontiers in neural circuits, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 86 citations in OpenAlex.

  1. Article
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  10. Whisker Vibrations and the Activity of Trigeminal Primary Afferents in Response to Airflow.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
  11. Article
  12. Stimulus Context and Reward Contingency Induce Behavioral Adaptation in a Rodent Tactile Detection Task.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
  13. Article
  14. Primary Tactile Thalamus Spiking Reflects Cognitive Signals.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
    Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 4 countries.

André M ChagasSystems Neurophysiology Group, Werner Reichardt Center for Integrative Neuroscience, University Tübingen Tübingen, Germany ; Department for Cognitive Neurology, Hertie Institute for Clinical Brain Research, University of Tübingen Tübingen, Germany.
Lucas TheisComputational Neuroscience Group, Werner Reichardt Center for Integrative Neuroscience, University Tübingen Tübingen, Germany ; Graduate School for Neural and Behavioural Sciences, University Tübingen Tübingen, Germany.
Biswa SenguptaGraduate School for Neural and Behavioural Sciences, University Tübingen Tübingen, Germany ; Wellcome Trust Centre for Neuroimaging, University College London London, UK ; Centre for Neuroscience, Indian Institute of Science Bangalore, India.
Maik C StüttgenDepartment of Neuroscience, Erasmus Medical Center Rotterdam, Netherlands ; Department of Biopsychology, University of Bochum Bochum, Germany.
Matthias BethgeComputational Neuroscience Group, Werner Reichardt Center for Integrative Neuroscience, University Tübingen Tübingen, Germany ; Max Planck Institute for Biological Cybernetics Tübingen, Germany ; Bernstein Center for Computational Neuroscience, University of Tübingen Tübingen, Germany.
Cornelius SchwarzSystems Neurophysiology Group, Werner Reichardt Center for Integrative Neuroscience, University Tübingen Tübingen, Germany ; Department for Cognitive Neurology, Hertie Institute for Clinical Brain Research, University of Tübingen Tübingen, Germany ; Bernstein Center for Computational Neuroscience, University of Tübingen Tübingen, Germany.
Bernstein Center for Computational Neuroscience Tübingen · DEUniversity of Tübingen · DEErasmus MC · NLHertie Institute for Clinical Brain Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sensory receptors determine the type and the quantity of information available for perception. Here, we quantified and characterized the information transferred by primary afferents in the rat whisker system using neural system identification. Quantification of "how much" information is conveyed by primary afferents, using the direct method (DM), a classical information theoretic tool, revealed that primary afferents transfer huge amounts of information (up to 529 bits/s). Information theoretic analysis of instantaneous spike-triggered kinematic stimulus features was used to gain functional insight on "what" is coded by primary afferents. Amongst the kinematic variables tested--position, velocity, and acceleration--primary afferent spikes encoded velocity best. The other two variables contributed to information transfer, but only if combined with velocity. We further revealed three additional characteristics that play a role in information transfer by primary afferents. Firstly, primary afferent spikes show preference for well separated multiple stimuli (i.e., well separated sets of combinations of the three instantaneous kinematic variables). Secondly, neurons are sensitive to short strips of the stimulus trajectory (up to 10 ms pre-spike time), and thirdly, they show spike patterns (precise doublet and triplet spiking). In order to deal with these complexities, we used a flexible probabilistic neuron model fitting mixtures of Gaussians to the spike triggered stimulus distributions, which quantitatively captured the contribution of the mentioned features and allowed us to achieve a full functional analysis of the total information rate indicated by the DM. We found that instantaneous position, velocity, and acceleration explained about 50% of the total information rate. Adding a 10 ms pre-spike interval of stimulus trajectory achieved 80-90%. The final 10-20% were found to be due to non-linear coding by spike bursts.

Indexed as

Action PotentialsAfferent PathwaysAnimalsFemaleRatsRats, Sprague-DawleySensory Receptor CellsVibrissaeinformation theoryprimary afferentsratspike-triggered mixture modeltactile codingvibrissaewhisker

Identifiers

PMID24367295
PMCPMC3852094
OpenAlexW2124200679

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.